HMMER2.0 [2.3.2] NAME Subfamily.MHCK.KD LENG 8 ALPH Amino RF no CS no MAP yes COM /opt/Bio/hmmer/bin/hmmbuild -f -n Subfamily.MHCK.KD ./Subfamily.MHCK.KD.hmm ./Subfamily.MHCK.KD.aln COM /opt/Bio/hmmer/bin/hmmcalibrate ./Subfamily.MHCK.KD.hmm NSEQ 4 DATE Mon Sep 20 14:14:50 2010 CKSUM 600 XT -8455 -4 -1000 -1000 -8455 -4 -8455 -4 NULT -4 -8455 NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644 EVD -7.087982 0.599081 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d b->m m->e -585 * -1585 1 2806 -444 -1270 -1265 -1732 -744 -1182 -1034 -1212 -1545 -1010 -869 -1380 -1102 -1325 -156 -259 -640 -2039 -1721 1 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -139 -6151 -7193 -894 -1115 -701 -1378 -1585 -3814 2 -52 -555 -1173 -1112 -1571 -872 -1041 -862 -950 -1353 -866 -843 -1455 -937 -1084 -285 3069 -557 -1898 -1539 2 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -148 -6160 -7202 -894 -1115 -701 -1378 -4392 -3708 3 -1667 -1473 -2001 -1964 1181 -2210 -25 -1224 -1658 -1018 -871 -1505 -2415 -1423 -1618 -1747 -1692 -1248 501 4149 3 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -158 -6170 -7212 -894 -1115 -701 -1378 -4392 -3595 4 -934 -1220 -1352 -1451 -2187 -1314 -1456 -2160 -1488 -2268 -1827 -1359 3760 -1471 -1571 -1129 -1216 -1780 -2050 -2023 4 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -169 -6181 -7223 -894 -1115 -701 -1378 -4392 -3470 5 -1016 -805 -2637 -2367 -591 -2470 -1853 3039 -2040 329 346 -2180 -2589 -1943 -2070 -1879 -1051 1184 -1698 -1261 5 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -183 -6195 -7237 -894 -1115 -701 -1378 -4392 -3335 6 -608 5196 -2368 -2362 -1635 -1253 -1702 -987 -2034 -1540 -1191 -1745 -1831 -1953 -1922 -934 -927 -770 -1855 -1692 6 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -201 -6213 -7255 -894 -1115 -701 -1378 -4392 -3186 7 2806 -444 -1270 -1265 -1732 -744 -1182 -1034 -1212 -1545 -1010 -869 -1380 -1102 -1325 -156 -259 -640 -2039 -1721 7 - -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249 - -223 -6235 -7277 -894 -1115 -701 -1378 -4392 -3020 8 -1369 -1199 -2542 -2295 -129 -2453 -1603 488 -1867 2607 742 -2168 -2539 -1724 -1835 -1992 -1384 130 -1284 -897 8 - * * * * * * * * * * * * * * * * * * * * - * * * * * * * -4392 0 //