Gene LRR3_f (S.moellendorffii)

LRR3_f

Species: S.moellendorffii
Alias: LRR3_f
External Links:
Annotation:

Classification

Group: TKL
Family: IRAK
Subfamily: LRR3

Sequence

Name Sequence Type Origin Length Description Download
LRR3_f.AA Protein None 462 None Fasta, JSON
LRR3_f.NA RNA None 1389 None Fasta, JSON
LRR3_f.kin_dom Protein Kinase Domain None 98 None Fasta, JSON

Protein domain

Protein domains of LRR3_f.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
LRRNT_2 LRR3_f.AA LRRNT_2 37-75 30 5e-05 19.24 Pfam 1-43 (46) Show / Hide 
Range on Protein: 37-75
Range on HMM: 1-43/46
Sequence Identity: 30% (13 aa)

QSQDVSTLLKIKPALDT-NPALPLLLSWSFQN-P--LCNWQGV
 ..|. .||..| .|.  .| .. |.||.. . .   |.| ||
HNDDGQALLAFKSSLNDSDPHHGVLSSWNPSSSDSDCCSWTGV
LRR_1 LRR3_f.AA LRR_1 131-153 44 0.002316 16.09 Pfam 1-26 (26) Show / Hide 
Range on Protein: 131-153
Range on HMM: 1-26/26
Sequence Identity: 44% (12 aa)

GLRKLELSS-N--NLTGPIPEE-ISNA
 |..| ||. |  |||| ||.. . | 
NLQHLDLSGCNCCNLTGHIPPSCF-NL
LRR_1 LRR3_f.AA LRR_1 155-177 29 0.021068 12.69 Pfam 1-26 (26) Show / Hide 
Range on Protein: 155-177
Range on HMM: 1-26/26
Sequence Identity: 29% (8 aa)

SLAFIHLGN-N--RLNGSIPST-IWKL
.|  ..|.. |  .| |.||.  . .|
NLQHLDLSGCNCCNLTGHIPPSCF-NL
LRR_1 LRR3_f.AA LRR_1 180-203 33 0.248498 8.89 Pfam 1-26 (26) Show / Hide 
Range on Protein: 180-203
Range on HMM: 1-26/26
Sequence Identity: 33% (9 aa)

VLAELDLDH-N--QLSGSIPVAADPKA
 | .|||.. |  .|.|.||  .  . 
NLQHLDLSGCNCCNLTGHIPPSCF-NL
LRR_1 LRR3_f.AA LRR_1 207-230 37 0.004348 15.12 Pfam 1-26 (26) Show / Hide 
Range on Protein: 207-230
Range on HMM: 1-26/26
Sequence Identity: 37% (10 aa)

NLTSLRLNS-N--NLSGLVPSEFLKSL
||..| |.. |  ||.| .|.. . .|
NLQHLDLSGCNCCNLTGHIPPSCF-NL
LRR_1 LRR3_f.AA LRR_1 233-242 54 1.848226 5.8 Pfam 1-11 (26) Show / Hide 
Range on Protein: 233-242
Range on HMM: 1-11/26
Sequence Identity: 54% (6 aa)

SLTELDLSN-N
.|..||||. |
NLQHLDLSGCN
Kinase LRR3_f.AA TKL 362-443 15 2.7e-10 33.28 In-house 1-130 (364) Show / Hide 
Range on Protein: 362-443
Range on HMM: 1-130/364
Sequence Identity: 15% (20 aa)

LGKTSYGTVYKAKLQS---------GPMITLRLLRDGSV---------------------------KDRDEFVSAVKELGLIRHRNLVPLRAYYHGPKD-
.|. ..|.|||.|..          |  .    ..  ..                           . |....  .. .  .|| |.|.. .|   |.. 
IGSGGFGEVYKGKWRGWGGKCPSDTGKDVAVKKFKSHNDDEFTKNSQENNDNNNYSDMQLNDPEASWFRFFEEEEIMMMSRLRHPNIVQFMGYCCCPPCG

-----------EKLLVYDYIPKGNLQELIH
           .  .|..|.|.|.| ...|
CVCMHPVGPWGQLCIVMEYCPGGSLLHYLH
Kinase LRR3_f.AA Dicty4-Unclassified 386-445 35 5.4e-08 23.44 In-house 30-96 (263) Show / Hide 
Range on Protein: 386-445
Range on HMM: 30-96/263
Sequence Identity: 35% (24 aa)

LRDGSVKDR----DEFVSAVKELGLIRHRNLVPLRAYYHGP---KDEKLLVYDYIPKGNLQELIHSK
. ... | |    ..|   |  ||.| | ||| .. |   |   |     |   ..|||| |.||||
FNENKFKFREEMIQDFKKEVEILGSIQHPNLVKCYGYCINPRSHKSTMCIVMEFMHKGNLFEVIHSK
Kinase LRR3_f.AA TK 359-446 14 2.9e-05 12.77 In-house 4-154 (486) Show / Hide 
Range on Protein: 359-446
Range on HMM: 4-154/486
Sequence Identity: 14% (22 aa)

GEVLGKTSYG---TVYKAKLQSGP-----------------------------MITLRLLRDGSVKDRDE--------------FVSAVKELG--LIRHR
|..||.  .|   .|||.......                               .|..  . | ... .              .... | .   | .| 
GKKLGEGQFGSFGEVYKGEWRGRNPWNGKRFPCHMTVTLKCKNGKEGGKTPVAVKMLKEGDAMSQEEFFDEEMHDRDGGEDFLEEAEEMKMMCHSLGHHP

NLVPLRA--YYHGPK---------DEKLLVYDYIPKGN----LQELIHSKS
|.| | .    ..||            ..|  | |.|.    |..  ....
NIVRLYGVCTQGEPKPCFEVVVHQEPWMIVMEYMPHGDMDGSLRDYLRKCR
Kinase LRR3_f.AA RTKE 394-438 28 0.000101 11.97 In-house 56-99 (293) Show / Hide 
Range on Protein: 394-438
Range on HMM: 56-99/293
Sequence Identity: 28% (13 aa)

RDEFVSAVKELGLIRHRNLVPLRAYYHGPKDEKLLVYDYIPKGNL
..|||...  . ...|.|.| |  . .    . ..||.|.| | |
HHEFVQEMTMMCKLHHPNVVHLLHVVQMKQ-HFMMVYEYMPGGQL
Kinase LRR3_f.AA MLK 356-446 17 0.000121 12.18 In-house 1-105 (291) Show / Hide 
Range on Protein: 356-446
Range on HMM: 1-105/291
Sequence Identity: 17% (19 aa)

NASGEVLGKTSYGTVYKAKLQSGP---------MITLRLLRDGSVKD--RDEFVSAVKELGLIRHRN----LVPLRAYYHGPKDEKLLVYDYIPKGNLQE
    |..|. |.| |.|.. .            ... |   | |...  ...|   ...|  ..|.|     .....  . |  . ..|  |...| | .
IQFHEWIGSGSFGKVWKGRWRNKDIVAKIVAVKRVRARIF-DKSDTYCEQWDFEMECRHLRILSHPNNHPCIIQFYGVCLQPPCHFCIVMEYCEGGSLYN

LIHSKS
..|...
VLHGAR