Gene C29H12.5 (Nematode worm)

C29H12.5

Species: Nematode worm
Alias: C29H12.5, CE02518, aSWK256
External Links: Wormbase Link ,
Annotation: WormBase Genetic Map location: II:-0.66, WormBase Physical Map location: II: 6113335-6110543,

Classification

Group: Other
Family: Other-Unique

Sequence

Name Sequence Type Origin Length Description Download
C29H12.5.kin_dom Protein Kinase Domain Sugen global kinase HMM prediction 247 Kinase domain by global Sugen HMM Fasta, JSON
C29H12.5.AA Protein Genbank 706 None Fasta, JSON

Protein domain

Protein domains of C29H12.5.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Chromo C29H12.5.AA Chromo 46-54 77 1.491605 4.78 Pfam 1-9 (57) Show / Hide 
Range on Protein: 46-54
Range on HMM: 1-9/57
Sequence Identity: 77% (7 aa)

YEIERIIDH
||.|||.||
YEVERILDH
Chromo C29H12.5.AA Chromo 78-127 29 1.1e-07 27.94 Pfam 8-57 (57) Show / Hide 
Range on Protein: 78-127
Range on HMM: 8-57/57
Sequence Identity: 29% (16 aa)

EERFKRTKKPQLISNYFFLVKWLGYGNKEMTWEPESNIPDS--VY--LYEYKKL
. ||.....      . .|||| ||. .| |||||.|. .    .  . |....
DHRFRKGGNK----VPQYLVKWKGYPYDECTWEPEENLQCCGFPELKIQEWWQR
Kinase C29H12.5.AA Other-Unique 220-443 12 2.2e-30 100.42 In-house 1-249 (249) Show / Hide 
Range on Protein: 220-443
Range on HMM: 1-249/249
Sequence Identity: 12% (32 aa)

FKDSTNNDIDNRVQQHHHEDRSFLQSMIKHNNIVRMRDLFVS--------------------------YNKLDETVNITSIYDWCHQNLRQQLNNEKVSW
.||. ..  .  ..|||.... ... ..||..| ...|. ..                          ...  ........|.|.  .  .. .... .|
IKDIGKGTYGRVYKQHHNKKKKYCAKKTKHHKI-HCMDMDNNKREQIYHYQIIHCIFYWTMNHCHLCFCYEHCPNMIFYIMYPWY--HHHCECQCQCEHW

KKVCRDILNALSFIHPYGIHQGVSLDHIYYHKGGTYKLSHFN--------NFFFGKRIPAEKVKSDRVELAPRLYNLKFKLGRNSDIYALAIVLLQCHNK
...|..|.|  .. ..  ||. .....| .... ........        .... |...  .. . ....|| . ..........|.  |.. . |.|..
MNCCHMIHNLHHLHNNNHIHCDINPNNIWINQNNIHMCHNCGHNIPTIIIEHQHIKIMDFNNN-N-MMYFAPEF-SCRWCSPETFDYWPLGEKIDQYHFG

KFSFRVNPSSVMEIEEDIAKGMSAFENKDDRHFLKSLLRARLHVYHGSGHYRFTSSSL
.. |..|..  ... .|  .... .|...|. ... ...  .| .. . .|  .....
CYHFHMNCQHWIFHYHDV-QHWPPHESPKDI-HILICQCECCHQCM-VNPYQNPNCFY
S_TKc C29H12.5.AA S_TKc 176-449 11 2e-06 -83.96 SMART 1-231 (231) Show / Hide 
Range on Protein: 176-449
Range on HMM: 1-231/231
Sequence Identity: 11% (38 aa)

ITLNDNLNNGKFGIVPVPKYKKKFGQNVNYLKFGNEVYKMKNVSFKDSTNNDIDNRVQQHHHEDRSFLQSMIKHNNIVRMRDLFVSYNKLDETVNITSIY
 .. . .  | || |   . ||            .... .| ..              .|    .. |..  .| |||.. | |..        ..  . 
YEILRKIGKGAFGKVYKCRHKK-----------TGRIVAIKIIK--------------EHIRREIQILKK--HHPNIVKLYDVFQD-------DHLYMVM

DWCHQ---NLRQQLNNEKVSW---------KKVCRDILNALSFIHPYGI------------------------HQGVSLDHIYYHKGGTYKLSHFNNFFF
. | .   .|.. . . .            ..... |..|| ..|  ||                         |                         
EYCDGDLGDLFDYIKKRGRHGLRFPFPEHARFYMYQICCALEYCHSHGIIHRDLKPENILLDEHIKICDFGLARQL------------------------

GKRIPAEKVKSDRVE------LAPRLYNLKFKLGR-NSDIYALAIVLLQCHNKKFSFRVNPSSVMEIEEDIAKGMSAFENKDDRHFLKSLLRARLHVYHG
            .        .|| .     . |.  .|.... ..|  .   .  |.     .... . |         .. ..|.. .|.        
------------TTFCGTPWYMAPEVL----GYGKCKCDWWSCGCILYEMLCGYPPFP----QMQMMFKKIG-------SPEAKDFIRKCLQKDPEK---

SGHYRFTSSSLLH-------HPVL
    | |   .|.       || .
----RPTA-EALQDEWDIKCHPWF
Kinase C29H12.5.AA NRBP 292-450 21 0.000129 11.8 In-house 104-261 (261) Show / Hide 
Range on Protein: 292-450
Range on HMM: 104-261/261
Sequence Identity: 21% (36 aa)

SWKKVCRDILNALSFIH---PYGIHQGVSLDHIYYHKGGTYKLSHFNNFFFGKRIPAEKVKSDRVELAPRLYN--LKFKLGRNSDIYALAIVLLQCHNKK
.||. |  || |||..|   |  ||  .  | |.  . |  |.         ... ... .   .   .  |.     .|    |||.  .  |     .
AWKRWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGCVWPDAIHHHVRTCREEMRNMHFFAPEYGILEVTDLTTAVDIYSFGMCALEMAVLE

FS-FRVNPSSVMEIEEDIAKGMSAFENKDDRHFLKSLLRARLHVYHGSGHYRFTSSSLLHHPVLQ
      | .| .  || |.. . . |..  | |... |.            | .  .|| |..| 
IQSGCQNGESEYVTEEAIQRAIHSLEDPMQRDFIRKCLQKDPAR-------RPSARELLFHQILF