Gene 20471 (Tetrahymena)

20471

Species: Tetrahymena
Alias: 3682.m00062, PreTt20471, 1102, TTHERM_00824030, 20471, 141.m00128
External Links: Tetrahymena Genome Database (TGD)
Annotation:

Classification

Group: Other
Family: Ciliate-E1

Sequence

Name Sequence Type Origin Length Description Download
20471.AA Protein None 593 None Fasta, JSON
20471.kin_dom Protein Kinase Domain None 137 None Fasta, JSON
20471.NA RNA None 1782 None Fasta, JSON

Protein domain

Protein domains of 20471.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase 20471.AA Ciliate-E1 34-213 21 5.9e-27 84.96 In-house 1-202 (202) Show / Hide 
Range on Protein: 34-213
Range on HMM: 1-202/202
Sequence Identity: 21% (44 aa)

IDFIDQEQHLTAYSLKHQ-----QRVILRISQNSQEEYDKLQKEYV-IMQQLKSYKNIILVFDMIVIKDCFICIIVQEYPQKNLFDEMQ---------EL
|   .. . . |.. ...     | .|... . .|.......|||  ||. .|....|| ..|.| |... ||||..|. ...|.|..|         ..
IGNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMK-FKKECYIIQIIDYIKIDQNYICIIIFECCCCSLKDYLQNHNRLEYWQQC

KNKNKLHTAEVMTEIILQISHAICMIHYNKISHQHINSKNIIISSNGTYKLSNFKHCFKIPSHQSDLFQAEGYIYEIKDQQKQL--------DNKNNHQN
..... .| . ...|| |. ......|...| |..|. .||.|...| |... |  . .. ..| .  | .||.   . ...          ..| |.. 
QQNQNQFTFQQKMQIIFQLIDGLIELHQYNIIHRDIKPQNILINNQGNYVYCDFGISKFLKNNQNQQCQYKGYTHYYYPPEQYNCPEQEHNKNQKINYKS

YLF
 ..
DIY
Kinase 20471.AA Ciliate-B2 47-172 22 1.8e-07 13.55 In-house 23-148 (197) Show / Hide 
Range on Protein: 47-172
Range on HMM: 23-148/197
Sequence Identity: 22% (29 aa)

SLKHQQRVILRISQN-SQEEYDKLQKEYVIMQQLKSYKNIILVFDMIVIKDCFICIIVQEYPQKNLFDEMQELKNKNKLHTAEVMTEIILQISHAICMIH
|... | ....|  |  . . . .|.|. ||. .  . |.. . |.| |.   | ... |  .  | .|.| .. . |  . . .  .| |   .   ..
SIREYQDLAFKIYFNKQDCDKEEIQHEIKIMKMFEYNINVVKYIDHIQINET-IDVLIMEKCECSLKQELQKIQKQQKCFNNQKLYQMIFQLIDGLIQFR

YNKISHQHINSKNIIISSNGTYKLSNF
 . | |  |. .|| ...|| |....|
MYNILHLDIKPQNILFMQNGNYVYCDF
TPR 20471.AA TPR 390-423 17 0.579193 2.67 SMART 1-34 (34) Show / Hide 
Range on Protein: 390-423
Range on HMM: 1-34/34
Sequence Identity: 17% (6 aa)

IFQYQQICYNYKQLKEYKTSLVYGKKALKLAKKI
.  . ..   | ....|.  . . .|||.|. . 
AEAWYNLGNCYYKMGDYDEAIECYQKALELDPNN
TPR_1 20471.AA TPR_1 400-423 25 15.271064 2.39 Pfam 11-34 (34) Show / Hide 
Range on Protein: 400-423
Range on HMM: 11-34/34
Sequence Identity: 25% (6 aa)

YKQLKEYKTSLVYGKKALKLAKKI
| ....|.  . . .|||.|  . 
YYKMGNYDEAIECYQKALELNPNN
TPR 20471.AA TPR 475-508 17 0.001262 19.29 SMART 1-34 (34) Show / Hide 
Range on Protein: 475-508
Range on HMM: 1-34/34
Sequence Identity: 17% (6 aa)

GDCLCTIACMKSGLKQFEESINYYQKSIEVFQKI
 .... .. .   .....| |..|||..|.  . 
AEAWYNLGNCYYKMGDYDEAIECYQKALELDPNN
TPR_1 20471.AA TPR_1 475-508 17 0.006977 14.05 Pfam 1-34 (34) Show / Hide 
Range on Protein: 475-508
Range on HMM: 1-34/34
Sequence Identity: 17% (6 aa)

GDCLCTIACMKSGLKQFEESINYYQKSIEVFQKI
 . .. ..     .....| | .||| .|.  . 
AEAWYNLGNCYYKMGNYDEAIECYQKALELNPNN
TPR 20471.AA TPR 518-551 23 0.001114 19.47 SMART 1-34 (34) Show / Hide 
Range on Protein: 518-551
Range on HMM: 1-34/34
Sequence Identity: 23% (8 aa)

SACFENLGVAYENQGDIQMSVLYYEDCLKMNKFL
. .. |||..|...||... . .|. .|...   
AEAWYNLGNCYYKMGDYDEAIECYQKALELDPNN
TPR_1 20471.AA TPR_1 518-551 23 0.002045 15.91 Pfam 1-34 (34) Show / Hide 
Range on Protein: 518-551
Range on HMM: 1-34/34
Sequence Identity: 23% (8 aa)

SACFENLGVAYENQGDIQMSVLYYEDCLKMNKFL
.  . |||..|...|. .  . .|. .|..|   
AEAWYNLGNCYYKMGNYDEAIECYQKALELNPNN
TPR_1 20471.AA TPR_1 560-581 22 31.116536 1.31 Pfam 1-22 (34) Show / Hide 
Range on Protein: 560-581
Range on HMM: 1-22/34
Sequence Identity: 22% (5 aa)

SSCYKKLCRVYRKQNREQEALK
.  .. |  .|.|... .||..
AEAWYNLGNCYYKMGNYDEAIE