Gene n1200 (Tetrahymena)
Protein domains of n1200.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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|Domain||Protein name||Domain Name||Range||Identity (%)||Significance||Score||Profile Source||Profile Range (length)||Alignment|
|Kinase||n1200.AA||Ciliate-C5||15-50||72||6.4e-15||45.32||In-house||1-36 (260)||Show / Hide|
Range on Protein: 15-50 Range on HMM: 1-36/260 Sequence Identity: 72% (26 aa) IYLSSYISQCGFGCVFEYKYNEQIVAVKYNKVKKSK ||| ||||| ||||||| |||| ||||| |.. | IYLTSYISQGGFGCVFEAKYNEEIVAVKCSKPNFEK
|Kinase||n1200.AA||Type2||15-42||33||0.000444||9.13||In-house||1-33 (315)||Show / Hide|
Range on Protein: 15-42 Range on HMM: 1-33/315 Sequence Identity: 33% (11 aa) IYLSSYISQCGFGCVFEYKYNEQ-----IVAVK | |. |.. .||||. ..... .|||| IQLMELIGKGRFGCVWKAQWHNNNGEKRTVAVK
|Kinase||n1200.AA||Ciliate-C5||55-83||58||4.7e-05||12.3||In-house||109-137 (260)||Show / Hide|
Range on Protein: 55-83 Range on HMM: 109-137/260 Sequence Identity: 58% (17 aa) YQKNYSNNLKHSDAKIESILYNSQGKYFN ..| ||| ||| | | |||.|| | || FEKIQQNNLIHSDVKPENILYDSQEKCFN