Gene n1183 (Tetrahymena)

n1183

Species: Tetrahymena
Alias: 305.m00013, 1183, n1183
External Links:
Annotation:

Classification

Group: Other
Family: Ciliate-A8

Sequence

Name Sequence Type Origin Length Description Download
n1183.AA Protein None 180 None Fasta, JSON
n1183.NA RNA None 615 None Fasta, JSON

Protein domain

Protein domains of n1183.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n1183.AA Ciliate-A8 22-160 38 5.7e-38 128.62 In-house 1-151 (151) Show / Hide 
Range on Protein: 22-160
Range on HMM: 1-151/151
Sequence Identity: 38% (58 aa)

YEYVKIMSKTDFSSEIIAFSQKFQCCVAIKIFKMLNGQKDIQVY--NYQLNLIQSLRDQRYVLKILDYFQDIKIGLAAIVIEHCYC--------NLSNIL
|.|.|.  | |||  ..| |...|| |||||.|..|.|. |  .  . . . .| .....|.|.|..  || ..|. |||.| | |        ||. ||
YKYQKVLEKGDFSYVVQAYSINHQCQVAIKIIKYMNQQNKINDKEFEKCIQAMQKIKNEKYILQIIECIQDKEQGFIAIVTEFCDCFDFYKKKENLASIL

E--LNELNHKQIQAISYQILKGLCILMEKDIVQHTILAKDILYCKKRNQFF
|  || .. .|| |. || ||.| .. ||.|. . |    ||| .. ||| 
ENNLNKFTFEQIVALTYQLLKCLLVFQEKGIIHCDIKPQNILYSWSKNQFI
Kinase n1183.AA Ciliate-E1 28-178 20 2.2e-11 33.73 In-house 1-167 (202) Show / Hide 
Range on Protein: 28-178
Range on HMM: 1-167/202
Sequence Identity: 20% (35 aa)

MSKTDFSSEIIAFSQKFQ-CCVAIKIFKML--NGQKDIQVYNYQLN-LIQSLRDQRYVLKILDYFQDIKIGLAAIVIEHCYCNLSNILE-----------
 .. .||  ..|..|. . . ||.||...     | ..| .... . . . .. . |...|.||... .. . .|..| | |.| . |.           
IGNGSFSIVFKAKQQNNNYNQVAQKIINCCFNYNQNHFQDEIKEYYKIMK-FKKECYIIQIIDYIKIDQNYICIIIFECCCCSLKDYLQNHNRLEYWQQC

---LNELNHKQIQAISYQILKGLCILMEKDIVQHTILAKDILYCKKRNQFFIALFGYSIYFKIGYQDYY
    |... .|. .| .|...||..|  . |    |  . ||.... ... .. || |  .|   ....
QQNQNQFTFQQKMQIIFQLIDGLIELHQYNIIHRDIKPQNILINNQ-GNYVYCDFGISKFLKNNQNQQC
Kinase n1183.AA MAPK-Unclassified 98-132 35 6e-05 13.23 In-house 83-122 (575) Show / Hide 
Range on Protein: 98-132
Range on HMM: 83-122/575
Sequence Identity: 35% (14 aa)

IVIEHCYC---NLSNILELNE--LNHKQIQAISYQILKGL
|| . .     .|  |.  |.  ..|..||.. ||||.||
IVMDYMQTSLFDLHQIIKSNQDHWCHQHIQYFFYQILRGL
Kinase n1183.AA MAPK 98-132 36 0.000281 10.44 In-house 93-130 (328) Show / Hide 
Range on Protein: 98-132
Range on HMM: 93-130/328
Sequence Identity: 36% (14 aa)

IVIEHCYCNLSNILE-LNELNHKQIQAISYQILKG--L
|| | . ..| .|..  ..|... || . ||||.|  |
IVMELMETDLHQIIKSQQPLSDDHIQYFMYQILRGLKL
Kinase n1183.AA CMGC 69-132 13 0.000862 7.31 In-house 72-193 (513) Show / Hide 
Range on Protein: 69-132
Range on HMM: 72-193/513
Sequence Identity: 13% (16 aa)

LNLIQSLR----------------DQRYVLKILDYFQDIK---------------IGLAAIVIEHCYCNLSNILELNE----------LNHKQ-------
. . . |.                .  ...|..|.|.. .                    .| |.. ..| .... |           |.. .       
IKILKHLNKNHDPNWQRRDDPDNKHHNNIVKLYDIFYHKNSDGNEYEDKHIISQHFNHLYLVFEYMDHDLYQYIKNNQFDYQGKRPMPLSE-HENKHPHR

-----IQAIS------YQILKGL
     |. ..      ||||.||
RPPHNIKYFMIHIRYMYQILRGL