Gene CAMK1c-S5_w (S.moellendorffii)

CAMK1c-S5_w

Species: S.moellendorffii
Alias: CAMK1c-S5_w
External Links:
Annotation:

Classification

Group: CAMK
Family: CAMK1
Subfamily: CAMK1c

Sequence

Name Sequence Type Origin Length Description Download
CAMK1c-S5_w.AA Protein None 249 None Fasta, JSON
CAMK1c-S5_w.NA RNA None 750 None Fasta, JSON
CAMK1c-S5_w.kin_dom Protein Kinase Domain None 73 None Fasta, JSON

Protein domain

Protein domains of CAMK1c-S5_w.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CAMK1c-S5_w.AA CAMK 139-210 20 2.1e-12 35.54 In-house 308-425 (425) Show / Hide 
Range on Protein: 139-210
Range on HMM: 308-425/425
Sequence Identity: 20% (24 aa)

QSFYTTAMDVWALGVIAYELLRDYKQFREIK-------------------LLRAGEFP-DGCPLS------------------------EAEDLICGMLA
.  |. . |.|..||| | .|  |  |.. .                     ..|..  .  ..|                        |. |||..|| 
KPYYGPKCDMWSCGVILYIMLCGYPPFYGDCDNEICEDEWIGMNDYELFEKIMKGKYDFPPPYFSPISCNYGPEWWDDISDEFHHFVSQECKDLIRKMLQ

VEPSERLTLDGVLE--WI
|.|..|.|.. .|.  |.
VDPEKRMTIEQCLNHPWM
Kinase CAMK1c-S5_w.AA Aur 184-210 44 1.9e-09 20.58 In-house 229-257 (257) Show / Hide 
Range on Protein: 184-210
Range on HMM: 229-257/257
Sequence Identity: 44% (13 aa)

EAEDLICGMLAVEPSERLTLDGVLE--WI
|| |||.. | ..|..|.||| ...  ||
EAKDLISKILQHDPKQRMTLDQIMNHPWI
Kinase CAMK1c-S5_w.AA AGC 142-202 19 9e-09 17.27 In-house 280-375 (395) Show / Hide 
Range on Protein: 142-202
Range on HMM: 280-375/395
Sequence Identity: 19% (19 aa)

YTTAMDVWA--LGVIAYELLRD--------------------YKQFREIKLLRAGEFPDGCP------------L-SEAEDLICGMLAVEPSERLT
|. | | |.  ||.. ||.|                       .  . ..  .. ...   |            . .|| ||| ..| ..|..||.
YGKACDWWSFGLGCLMYEMLTGYPPFYGDNPQENRHPFRNPMEMFQKIMNGRYFINWKVKFPFPEDPQFPEDRWFSPEAKDLIKKLLCKDPEKRLG
Kinase CAMK1c-S5_w.AA Pkinase 139-210 18 6.4e-08 29.08 Pfam 186-293 (293) Show / Hide 
Range on Protein: 139-210
Range on HMM: 186-293/293
Sequence Identity: 18% (20 aa)

QSFYTTAMDVWALGVIAYELLRDYKQFREI----------KLLRAGE------FPDGCPL------------------SEAEDLICGMLAVEPSERLTLD
.. |... |.|..|.| ||.|  .  |..           .. | ..      .|  |.                   .|. |.|...|.. |..|.| .
GQYYGPKVDMWSCGCILYEMLCGRPPFPGHCWHDNHDQMQMICRIMGPPLHFDWPWWCSISYFFFRHWHFHWTFHNWSEECKDFIKWCLCKDPKKRPTAE

GVLEW--I
 .|.   .
QILQHPWF
Kinase CAMK1c-S5_w.AA Ciliate-E2 138-210 25 6.6e-08 23.2 In-house 269-365 (365) Show / Hide 
Range on Protein: 138-210
Range on HMM: 269-365/365
Sequence Identity: 25% (25 aa)

LQSFYTTAMDVWALGVIAYELLRDYKQFREIKLLRAGEFPDGCPL-------------------SEAEDLICG----MLAVEPSERLT-LDGVL--EWI
.|  |... |.|.|||| ||.|  .  |  ..    ...   ||                     |. |||      || ..|..|.|  . .|  .|.
KQKGYDYKCDIWSLGVILYEMLFGKPPF--QQQIKQCKIDFPCPEWQKDTQCIQCKWKSWKKWSQECKDLIKKFGKRMLQKDPEKRITGWEQILNHPWF
Kinase CAMK1c-S5_w.AA CAMKL 147-204 22 1e-06 16.95 In-house 218-289 (297) Show / Hide 
Range on Protein: 147-204
Range on HMM: 218-289/297
Sequence Identity: 22% (17 aa)

DVWALGVIAYELL------R----------DYKQFREIKLLRAGEFPDGCPLSEAEDLICGMLAVEPSERLTLD
|.|..||| | ..      .          ..  .....    ...|  . .|...||| .|| | |..| |..
DIWSCGVILYAMVCGYLPFDDDTYNKQGKDNI-YLYWKIMCG-YYPPIWYHVSDCRDLIRKMLQVNPEKRPTIH
Kinase CAMK1c-S5_w.AA MAPKAPK 184-210 44 1e-06 16.0 In-house 264-292 (292) Show / Hide 
Range on Protein: 184-210
Range on HMM: 264-292/292
Sequence Identity: 44% (13 aa)

EAEDLICGMLAVEPSERLTLDGVLE--WI
|| |||  .| ..|..|||   |..  ||
EAKDLIRKLLRRDPTQRLTIEQVMNHPWI
Kinase CAMK1c-S5_w.AA RAD53 183-210 46 2e-06 14.67 In-house 276-305 (305) Show / Hide 
Range on Protein: 183-210
Range on HMM: 276-305/305
Sequence Identity: 46% (14 aa)

SEAEDLICGMLAVEPSERLTLDGVL--EWI
.|| ||| .|| |.| .|.| |..|   |.
EEAKDLIKWMLCVDPEKRYTIDEALNHPWM
Kinase CAMK1c-S5_w.AA NuaK 147-210 29 3e-06 12.03 In-house 181-252 (252) Show / Hide 
Range on Protein: 147-210
Range on HMM: 181-252/252
Sequence Identity: 29% (22 aa)

DVWALGVIAYELL--------RDYKQFREIKLLRAGEFPDGCPLSEAEDLICGMLAVEPSERLTLDGVLE--WI
| |.|||. | .         .|.|.   .|    |.. . |. |.|  ||  || |.|  | |.  . .  |.
DCWSLGVLLYTMVYGTMPFDGHDFKHL--VKQISQGAYYEPCKPSDACMLIRWMLMVNPRRRATIYDICHHWWV
Kinase CAMK1c-S5_w.AA CAMK1 183-210 38 4e-06 13.79 In-house 246-276 (276) Show / Hide 
Range on Protein: 183-210
Range on HMM: 246-276/276
Sequence Identity: 38% (12 aa)

SE-AEDLICGMLAVEPSERLTLDGVLE--WI
.. | |.|..|| |.|..|.| . .|.  ||
DQEAKDFIKHMLEVDPKKRYTCEQCLNHPWI
Kinase CAMK1c-S5_w.AA MSK 184-210 34 8e-06 15.6 In-house 249-277 (277) Show / Hide 
Range on Protein: 184-210
Range on HMM: 249-277/277
Sequence Identity: 34% (10 aa)

EAEDLICGMLAVEPSERLTLD--GVLEWI
.| ||| ..| . |. ||...  .. ||.
DAKDLIQWLLTKDPKKRLGMNDLRAHEWK
Kinase CAMK1c-S5_w.AA Aur 147-159 61 2.2e-05 9.6 In-house 183-195 (257) Show / Hide 
Range on Protein: 147-159
Range on HMM: 183-195/257
Sequence Identity: 61% (8 aa)

DVWALGVIAYELL
|.|.|||..|||.
DIWCLGVLCYELC
S_TKc CAMK1c-S5_w.AA S_TKc 9-210 11 0.000317 -114.95 SMART 1-231 (231) Show / Hide 
Range on Protein: 9-210
Range on HMM: 1-231/231
Sequence Identity: 11% (34 aa)

VELDSL----TFAAVLKACGSL-----------GDLETGRKIHAEEIGSLHRDDP--------------------VVG--SSLVSFYGKCG--------S
 |.  .    .|. | |.                ...  ..|. .       . |                    . |   .| ..  |.|        .
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIKEHIRREIQILKK-------HHPNIVKLYDVFQDDHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFP

VDEARQVFRSMDRG--------------------------------SKIWGLGTRCWKLTATRETRAACWISSSKCCARYGHGRPQGDVAYGPGGDELQD
  .|| ... . ..                                ...         .  |.. .|   .                             
E-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDEHIKICDFGLARQL------TTFCGTPWYMAPEVL-----------------------------

GHGDARLQSFYTT-AMDVWALGVIAYELLR-------DYKQFREIKLLRAGEFPDGCPLSEAEDLICGMLAVEPSERLTLDGVLE---------WI
          |.. . |.|..|.| ||.|        ... |. |.             .|| |.|...| ..|..|.|   .|.         |.
---------GYGKCKCDWWSCGCILYEMLCGYPPFPQMQMMFKKIG------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase CAMK1c-S5_w.AA MSK 142-159 55 0.001565 7.8 In-house 187-204 (277) Show / Hide 
Range on Protein: 142-159
Range on HMM: 187-204/277
Sequence Identity: 55% (10 aa)

YTTAMDVWALGVIAYELL
|  | |.| |||| |..|
YDEACDWWSLGVILYTML
Kinase CAMK1c-S5_w.AA CAMK1 141-159 52 0.028638 2.33 In-house 192-210 (276) Show / Hide 
Range on Protein: 141-159
Range on HMM: 192-210/276
Sequence Identity: 52% (10 aa)

FYTTAMDVWALGVIAYELL
.|  | |.|  ||| | ||
PYDKACDMWSIGVITYILL
Kinase CAMK1c-S5_w.AA MAPKAPK 147-159 61 0.1092 0.49 In-house 200-212 (292) Show / Hide 
Range on Protein: 147-159
Range on HMM: 200-212/292
Sequence Identity: 61% (8 aa)

DVWALGVIAYELL
| | |||| | .|
DMWSLGVIMYIML