Gene CAMK1c-S5_s (S.moellendorffii)
CAMK1c-S5_s
Species: S.moellendorffii
Alias: CAMK1c-S5_s
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| CAMK1c-S5_s.AA | Protein | None | 208 | None | Fasta, JSON |
| CAMK1c-S5_s.NA | RNA | None | 627 | None | Fasta, JSON |
| CAMK1c-S5_s.kin_dom | Protein Kinase Domain | None | 84 | None | Fasta, JSON |
Protein domains of CAMK1c-S5_s.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.
| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| Kinase | CAMK1c-S5_s.AA | AGC | 126-208 | 23 | 4.2e-17 | 39.31 | In-house | 266-373 (395) | Show / Hide |
Range on Protein: 126-208 Range on HMM: 266-373/395 Sequence Identity: 23% (28 aa) CG--TEKYMAPEVMARKGRKGESQNFYTAAIDVWG--LGVIAYELLKG------------------HKSRMEIDFLR------AGAFPT---------GF || | |||||. |. | | |. ||.. ||.| | .. .. . || . CGPCTPEYMAPEIL------------YGKACDWWSFGLGCLMYEMLTGYPPFYGDNPQENRHPFRNPMEMFQKIMNGRYFINWKVKFPFPEDPQFPEDRW GSDQAEDLLQGMLAVEPSKR |..| ||....| ..|.|| FSPEAKDLIKKLLCKDPEKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | CAMK | 120-208 | 25 | 2.9e-13 | 38.38 | In-house | 274-413 (425) | Show / Hide |
Range on Protein: 120-208
Range on HMM: 274-413/425
Sequence Identity: 25% (35 aa)
KEMSKYCGTEKYMA-PEVMARKGRK------GESQNFYTAAIDVWGLGVIAYELLKG-----HKSRMEID--------------FLRAGAF--PTGFGSD
. |. .||| ||| ||| .||.. | . |. ..|.| .||| | .| | .....|| ..| . | . |.
QKMKTFCGTPEYMAAPEVLNGKGHCNMQNATDEEKPYYGPKCDMWSCGVILYIMLCGYPPFYGDCDNEICEDEWIGMNDYELFEKIMKGKYDFPPPYFSP
-----------------------QAEDLLQGMLAVEPSKR
.. ||...|| |.|.||
ISCNYGPEWWDDISDEFHHFVSQECKDLIRKMLQVDPEKR
|
|||||||||
| S_TKc | CAMK1c-S5_s.AA | S_TKc | 20-208 | 17 | 6.9e-13 | 12.1 | SMART | 1-220 (231) | Show / Hide |
Range on Protein: 20-208 Range on HMM: 1-220/231 Sequence Identity: 17% (43 aa) YMRGKRLGCGGQGQVFMIHNGR--NTYAGKLFRSGSDAEREARLMSKLHACPGVVSFKGFVRERDGAKCYGTIVMELCGP---NLCEGLINCGP------ | .. .| |. |.|. .. . .| | . ...|| ....| .| .| .... .. . .|||.|. .| . . ..|. YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK--EHIRREIQILKK--HHPNIVKLYDVFQD-----DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFP MREEDAAKTI---------------------------------------KKEMSKYCGTEKYMAPEVMARKGRKGESQNFYTA-AIDVWGLGVIAYELLK . | .|.. . .. . .||| ||||||. |. ..|.| .|.| ||.| FPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDEHIKICDFGLARQL-TTFCGTPWYMAPEVL-----------GYGKCKCDWWSCGCILYEMLC GHK--SRMEIDFLRAGAFPTGFGSDQAEDLLQGMLAVEPS-------KR | . . .. |..| |.....| ..|. . GYPPFP-QMQMMFKKIG------SPEAKDFIRKCLQKDPEKRPTAEALQ |
|||||||||
| Kinase | CAMK1c-S5_s.AA | MSK | 125-170 | 44 | 1e-12 | 39.3 | In-house | 165-207 (277) | Show / Hide |
Range on Protein: 125-170 Range on HMM: 165-207/277 Sequence Identity: 44% (21 aa) YCGTEKYMAPEVMARKGRKGESQNF-YTAAIDVWGLGVIAYELLKGH .|.| |||||. .| |..|. | .|.|.|.|||| |..| |. PCFTLHYMAPEMLRR----GYAQDGGYDEACDWWSLGVILYTMLTGQ |
|||||||||
| Kinase | CAMK1c-S5_s.AA | Pkinase | 122-170 | 38 | 1.8e-12 | 45.19 | Pfam | 168-209 (293) | Show / Hide |
Range on Protein: 122-170 Range on HMM: 168-209/293 Sequence Identity: 38% (19 aa) MSKYCGTEKYMAPEVMARKGRKGESQNFYTAAIDVWGLGVIAYELLKGH |. .||| |||||| ... |. ..|.|..|.| ||.| |. MTTFCGTPWYMAPEVIR-------GGQYYGPKVDMWSCGCILYEMLCGR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | Ciliate-E2 | 116-169 | 29 | 6.9e-11 | 33.59 | In-house | 213-292 (365) | Show / Hide |
Range on Protein: 116-169 Range on HMM: 213-292/365 Sequence Identity: 29% (24 aa) KTIKKEMSK--------------------------YCGTEKYMAPEVMARKGRKG-ESQNFYTAAIDVWGLGVIAYELLKG .|. | ..| .||| |||||. .|. . . |. |. ..|.| |||| ||.| | RTH-KQQCKWYMFKNDTSRTPGYMDQIIQQNMFNTICGTPGYMAPEILNGKKYDNQQKQKGYDYKCDIWSLGVILYEMLFG |
|||||||||
| Kinase | CAMK1c-S5_s.AA | CAMK1 | 115-167 | 37 | 9.9e-11 | 27.36 | In-house | 160-210 (276) | Show / Hide |
Range on Protein: 115-167 Range on HMM: 160-210/276 Sequence Identity: 37% (21 aa) AKTIK-K--EMSKYCGTEKYMAPEVMARKGRKGESQNFYTAAIDVWGLGVIAYELL .| .. . |.. ||| |.|||| ..| .| |.|.|. ||| | || SKIFDHDENLMKTACGTPGYVAPEVLECKK-----DKPYDKACDMWSIGVITYILL |
|||||||||
| Kinase | CAMK1c-S5_s.AA | Ciliate-E2-Unclassified | 117-169 | 35 | 1.2e-10 | 33.23 | In-house | 214-266 (352) | Show / Hide |
Range on Protein: 117-169 Range on HMM: 214-266/352 Sequence Identity: 35% (20 aa) TIKKEMSKYCGTEKYM----APEVMARKGRKGESQNFYTAAIDVWGLGVIAYELLKG .....|. ||| || ||||. ... ... ..|.|.||||.||.| | WKQQMMWTFCGTPNYMPQYTAPEVLQGQNYDHSKA----YKCDIWSLGVILYEMLFG |
|||||||||
| Kinase | CAMK1c-S5_s.AA | PSK | 122-167 | 45 | 1.9e-10 | 29.3 | In-house | 157-194 (258) | Show / Hide |
Range on Protein: 122-167 Range on HMM: 157-194/258 Sequence Identity: 45% (21 aa) MSKYCGTEKYMAPEVMARKGRKGESQNFYTAAIDVWGLGVIAYELL | ||| | ||||. || || ..| | .||||| |. MKTTCGTPEYIAPEVLLRKP--------YTQSVDMWAVGVIAYILM |
|||||||||
| Kinase | CAMK1c-S5_s.AA | RSK | 125-170 | 40 | 6.7e-10 | 32.74 | In-house | 168-209 (278) | Show / Hide |
Range on Protein: 125-170 Range on HMM: 168-209/278 Sequence Identity: 40% (19 aa) YCGTEKYMAPEVMARKGRKGESQNF-YTAAIDVWGLGVIAYELLKGH .|.| |||||. .| .. |. ...| |.| |||. ||.| |. FCYTIEYMAPEMLKR----AN-QQGGHDKACDWWSLGVLMYEMLTGC |
|||||||||
| Kinase | CAMK1c-S5_s.AA | RSK-Unclassified | 125-169 | 44 | 6.9e-10 | 26.7 | In-house | 182-218 (283) | Show / Hide |
Range on Protein: 125-169 Range on HMM: 182-218/283 Sequence Identity: 44% (20 aa) YCGTEKYMAPEVMARKGRKGESQNFYTAAIDVWGLGVIAYELLKG .|||| |.|||.. | | |.|.| | ||.. ||.| | FCGTEEYLAPEMIRRCG--------HTKAVDWWTLGIVMYEMLFG |
|||||||||
| Kinase | CAMK1c-S5_s.AA | PKN | 123-169 | 44 | 1.4e-09 | 28.77 | In-house | 159-197 (260) | Show / Hide |
Range on Protein: 123-169 Range on HMM: 159-197/260 Sequence Identity: 44% (21 aa) SKYCGTEKYMAPEVMARKGRKGESQNFYTAAIDVWGLGVIAYELLKG | .||| ..||||. ... || |.| |||||. ||.| | STFCGTPEFLAPEVL--------TDTSYTRAVDWWGLGVLIYEMLVG |
|||||||||
| Kinase | CAMK1c-S5_s.AA | CAMK | 25-119 | 12 | 6e-05 | 11.11 | In-house | 1-186 (425) | Show / Hide |
Range on Protein: 25-119 Range on HMM: 1-186/425 Sequence Identity: 12% (24 aa) RLGCGGQGQVFMIHNGRNT--------------YAGKLFR---------------------------------SGSDAEREARLMSKLHA------CPGV || |. |.|. . ..| .| | . .|| ..|.||.. | . TLGRGSFGKVKLCIHKNTTGKERVHHIYTNGQKVAIKIIDKKKLKDKQNQDYSNCYKIDKSKCKHRYCWRRPKDRKNVRREIEIMKKLQGIGNKLDHPNI VSFKGFVRERD---------GAKC-------YGTIVM---ELCGP-NLCEGL------INC-------------GPMREEDAAKTIK ... . .. .. . .|| |.| |.. | | | . |..|.. .. IKLYEVYEDPHYFKNTNDYET-SKQVFTKDKHMYMVMEIMEYCSGGELFDDLFDYIVEHGCYGEEFDQFDIVERGRFTEREARRYFR |
|||||||||
| Pkinase | CAMK1c-S5_s.AA | Pkinase | 20-116 | 18 | 0.002017 | 13.18 | Pfam | 1-112 (293) | Show / Hide |
Range on Protein: 20-116 Range on HMM: 1-112/293 Sequence Identity: 18% (22 aa) YMRGKRLGCGGQGQVFMIHNGRNT--YAGKLFRSGSDAE---------REARLMSKLHACPGVVSFKGFVRERDGAKCYGTIVMELCGP-----NLCEGL | .|...| |. |.|. |. . .| | .. .. . .|...| .|. .| .| ....... . ..| .|||.|. |.. . YHIGRKIGSGSFGCVYKCHHKGTGKIVAVKIIKKRHEKSWKDQTHRRLSEIQIMKRLN-HPNIVRLYDWFED--KDHIY--MVMEYCEGGLYVMDLFDYI I--NCGPM--REEDAAK . |.. |... . STWRHGCFYFSEWECKF |
|||||||||
| Kinase | CAMK1c-S5_s.AA | Ciliate-E2 | 190-208 | 34 | 0.003073 | 6.95 | In-house | 330-352 (365) | Show / Hide |
Range on Protein: 190-208 Range on HMM: 330-352/365 Sequence Identity: 34% (8 aa) SDQAEDLLQG----MLAVEPSKR |... ||.. || ..|.|| SQECKDLIKKFGKRMLQKDPEKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | MSK | 190-208 | 47 | 0.008901 | 5.21 | In-house | 247-265 (277) | Show / Hide |
Range on Protein: 190-208 Range on HMM: 247-265/277 Sequence Identity: 47% (9 aa) SDQAEDLLQGMLAVEPSKR | .| ||.|..| . |.|| SPDAKDLIQWLLTKDPKKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | CAMK1 | 190-208 | 55 | 0.014212 | 3.23 | In-house | 245-264 (276) | Show / Hide |
Range on Protein: 190-208 Range on HMM: 245-264/276 Sequence Identity: 55% (11 aa) SDQ-AEDLLQGMLAVEPSKR ||| | |.. .|| |.|.|| SDQEAKDFIKHMLEVDPKKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | RSK | 190-208 | 47 | 0.032558 | 4.34 | In-house | 243-261 (278) | Show / Hide |
Range on Protein: 190-208 Range on HMM: 243-261/278 Sequence Identity: 47% (9 aa) SDQAEDLLQGMLAVEPSKR |. | ||...|| ..|.|| SQEAKDLIRKMLHRDPHKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | Ciliate-E2-Unclassified | 190-208 | 34 | 0.05378 | 2.74 | In-house | 318-340 (352) | Show / Hide |
Range on Protein: 190-208 Range on HMM: 318-340/352 Sequence Identity: 34% (8 aa) SDQAEDLLQ----GMLAVEPSKR |..|.|... || . |.|| SPEAKDFINDLLQKMLKKNPNKR |
|||||||||
| Kinase | CAMK1c-S5_s.AA | MSK | 24-49 | 38 | 0.089579 | 1.77 | In-house | 2-27 (277) | Show / Hide |
Range on Protein: 24-49 Range on HMM: 2-27/277 Sequence Identity: 38% (10 aa) KRLGCGGQGQVFMIHNGRNTYAGKLF | || ||.| .| .. .. .|||. KVLGTGGYGKFFICRKCVHHDTGKLY |
|||||||||