Gene CAMK1c-S4_f (S.moellendorffii)

CAMK1c-S4_f

Species: S.moellendorffii
Alias: CAMK1c-S4_f
External Links:
Annotation:

Classification

Group: CAMK
Family: CAMK1
Subfamily: CAMK1c

Sequence

Name Sequence Type Origin Length Description Download
CAMK1c-S4_f.AA Protein None 178 None Fasta, JSON
CAMK1c-S4_f.NA RNA None 537 None Fasta, JSON
CAMK1c-S4_f.kin_dom Protein Kinase Domain None 86 None Fasta, JSON

Protein domain

Protein domains of CAMK1c-S4_f.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase CAMK1c-S4_f.AA Ciliate-E2 92-177 25 3.1e-17 55.69 In-house 178-293 (365) Show / Hide 
Range on Protein: 92-177
Range on HMM: 178-293/365
Sequence Identity: 25% (32 aa)

SKG-VAHRDLKLENVFTKLQDASIDEPLIGGFGVVT--DDPREMSQ--------------------------------CCGTKKYMAPENIFIERYR---
||. . |||.|.||..          . |  ||  .  ||.... .                                .|||  |||||..  . |    
SKNNIIHRDIKPENILF---------IKIIDFGLSKKYDDDNQNRTHKQQCKWYMFKNDTSRTPGYMDQIIQQNMFNTICGTPGYMAPEILNGKKYDNQQ

-RLSYTKAVDVWGLGVMAYELLKGY
 .  |....|.| |||. ||.| |.
KQKGYDYKCDIWSLGVILYEMLFGK
Kinase CAMK1c-S4_f.AA AGC 136-177 43 2.4e-16 37.33 In-house 266-302 (395) Show / Hide 
Range on Protein: 136-177
Range on HMM: 266-302/395
Sequence Identity: 43% (20 aa)

CG--TKKYMAPENIFIERYRRLSYTKAVDVWG--LGVMAYELLKGY
||  |  ||||| .         |.||.| |.  ||.. ||.| ||
CGPCTPEYMAPEIL---------YGKACDWWSFGLGCLMYEMLTGY
Kinase CAMK1c-S4_f.AA Ciliate-E2-Unclassified 92-177 26 3.3e-15 49.23 In-house 161-267 (352) Show / Hide 
Range on Protein: 92-177
Range on HMM: 161-267/352
Sequence Identity: 26% (29 aa)

SKG-VAHRDLKLENVFTKLQDASI-DEPLIGGFGVVT---DD---------------PREMSQCCGTKKYM----APENIFI-ERYRRLSYTKAVDVWGL
.|. . |||.|.||..  ...     .. | .||      ..               . .|...|||  ||    ||| .   . . . .  ...|.|.|
HKNNIIHRDIKPENIL--FDNNGKNYYIKIIDFGISKKYQQNNNCDTNQQQKMQIWKQQMMWTFCGTPNYMPQYTAPEVLQGQNYDHSKA--YKCDIWSL

GVMAYELLKGY
|| .||.| ||
GVILYEMLFGY
Kinase CAMK1c-S4_f.AA Pkinase 92-177 36 1.1e-13 49.52 Pfam 126-209 (293) Show / Hide 
Range on Protein: 92-177
Range on HMM: 126-209/293
Sequence Identity: 36% (33 aa)

SKGVAHRDLKLENVFTKLQDASIDEPL-IGGFGVV----TDDPREMSQCCGTKKYMAPENIFIERYRRLSYTKAVDVWGLGVMAYELLKGY
|.|. |||||.||.. . ..  ||... |. ||.     .   . |.  |||  ||||| |      .  |...||.|..|.. ||.| |.
SMGIIHRDLKPENILID-NNGHIDACVKICDFGLAKQFDY-NNS-MTTFCGTPWYMAPEVIR----GGQYYGPKVDMWSCGCILYEMLCGR
Kinase CAMK1c-S4_f.AA CAMK 92-177 22 1.1e-13 39.71 In-house 197-331 (425) Show / Hide 
Range on Protein: 92-177
Range on HMM: 197-331/425
Sequence Identity: 22% (30 aa)

SKGVAHRDLKLENVFTKLQDASID-------------EPLIGGFGVVTDDPR--------------------------EMSQCCGTKKYMA-PENIFIER
|....|||||.||.     . . |                |  ||  .  ..                           |. .|||  ||| || .  ..
SHNIVHRDLKPENILLDDNNDDSDPVEHDEIFDWNNNNIKIIDFGFANKFDPGENNFMCSDYKGGEMHNQWTTPTEGQKMKTFCGTPEYMAAPEVLNGKG

YR---------RLSYTKAVDVWGLGVMAYELLKGY
           .  |....|.| .||. | .| ||
HCNMQNATDEEKPYYGPKCDMWSCGVILYIMLCGY
Kinase CAMK1c-S4_f.AA Ciliate-E2a 91-177 33 1.4e-10 27.4 In-house 119-213 (275) Show / Hide 
Range on Protein: 91-177
Range on HMM: 119-213/275
Sequence Identity: 33% (32 aa)

QSKGVAHRDLKLENVFTK-LQDASI--DEPLIGGFGVVTDD----PREMSQCCGTKKYMAPENIFIERY-RRLSYTKAVDVWGLGVMAYELLKGY
..... |||||.||.. | .   ||   .  |  ||  |.     .. | | |||  |.||| . ..    . .|.. .|.| .||. | || |.
HQRNIMHRDLKPENILFKNCSKNSIQNSDIKIIDFGLATFIDKDEKKYMFQKCGTPGYVAPEVLNNKEVLKHKQYDTKCDMWSCGVIFYILLCGK
Kinase CAMK1c-S4_f.AA TKL 93-174 18 3.4e-10 32.94 In-house 159-283 (364) Show / Hide 
Range on Protein: 93-174
Range on HMM: 159-283/364
Sequence Identity: 18% (23 aa)

KGVAHRDLKLENVFTKLQDA----------SIDEPLIGGFGVVTDDPRE----------------------MSQCCGTKKYMAPENI-----FIERY---
....||||| .|.. .              ... . |. ||  ..  ..                       . .|||. .|||| .     . | .   
PPIIHRDLKSKNILVDENWTNVSNYMYNPNADWCCKICDFGLSRFMSQSGNMNDTMTTMMESAEHQNNRKTTMTQCGTPRWMAPEVLRGQMNYTEKVGID

---RRLSYTKAVDVWGLGVMAYELL
   . ..|....||.  |.. .|.|
EFCKGFEYSEKCDVYSFGIVLWEIL
Kinase CAMK1c-S4_f.AA Aur 136-177 40 4.6e-10 22.21 In-house 162-198 (257) Show / Hide 
Range on Protein: 136-177
Range on HMM: 162-198/257
Sequence Identity: 40% (17 aa)

CGTKKYMAPENIFIERYRRLSYTKAVDVWGLGVMAYELLKGY
|||  ||.|| .      . .. . ||.| |||..|||. |.
CGTLDYMPPEMVE-----GQMHDHKVDIWCLGVLCYELCHGC
Kinase CAMK1c-S4_f.AA MSK 136-176 44 2.7e-09 27.55 In-house 166-206 (277) Show / Hide 
Range on Protein: 136-176
Range on HMM: 166-206/277
Sequence Identity: 44% (19 aa)

CGTKKYMAPENIFIER-YRRLS-YTKAVDVWGLGVMAYELLKG
|.|  |||||   ..| |   . | .|.|.|.|||  |..| |
CFTLHYMAPE--MLRRGYAQDGGYDEACDWWSLGVILYTMLTG
Kinase CAMK1c-S4_f.AA RSK 136-177 42 4.6e-08 25.95 In-house 169-209 (278) Show / Hide 
Range on Protein: 136-177
Range on HMM: 169-209/278
Sequence Identity: 42% (18 aa)

CGTKKYMAPENIFIERYRRLSYTKAVDVWGLGVMAYELLKGY
|.|  ||||| .     ..  ..||.|.| |||  ||.| |.
CYTIEYMAPEMLKRAN-QQGGHDKACDWWSLGVLMYEMLTGC
Kinase CAMK1c-S4_f.AA MARK 133-177 40 4e-06 16.26 In-house 163-203 (262) Show / Hide 
Range on Protein: 133-177
Range on HMM: 163-203/262
Sequence Identity: 40% (18 aa)

SQCCGTKKYMAPENIFIERYRRLSYTKAVDVWGLGVMAYELLKGY
. .|||. ||||| .  ..|    . ..||.| |||  | .. ||
NTFCGTPPYMAPEIFLKKPY----DGPKVDIWSLGVVLYFMVCGY
Kinase CAMK1c-S4_f.AA MARK 92-105 57 5.7e-05 12.38 In-house 122-135 (262) Show / Hide 
Range on Protein: 92-105
Range on HMM: 122-135/262
Sequence Identity: 57% (8 aa)

SKGVAHRDLKLENV
||...|||.|.||.
SKNIVHRDIKPENI
Kinase CAMK1c-S4_f.AA AGC 92-105 56 0.000483 4.76 In-house 171-186 (395) Show / Hide 
Range on Protein: 92-105
Range on HMM: 171-186/395
Sequence Identity: 56% (9 aa)

S-KGVAHRD-LKLENV
| .|. ||| ||.||.
SHMGIIHRDYLKPENI
Kinase CAMK1c-S4_f.AA Aur 92-105 57 0.000802 5.41 In-house 119-132 (257) Show / Hide 
Range on Protein: 92-105
Range on HMM: 119-132/257
Sequence Identity: 57% (8 aa)

SKGVAHRDLKLENV
||.. |||.| ||.
SKNIIHRDIKPENI
Kinase CAMK1c-S4_f.AA MSK 92-105 64 0.001463 7.9 In-house 119-132 (277) Show / Hide 
Range on Protein: 92-105
Range on HMM: 119-132/277
Sequence Identity: 64% (9 aa)

SKGVAHRDLKLENV
.||. |||||.||.
QKGIIHRDLKPENI
Kinase CAMK1c-S4_f.AA RSK 92-105 57 0.002045 8.78 In-house 122-135 (278) Show / Hide 
Range on Protein: 92-105
Range on HMM: 122-135/278
Sequence Identity: 57% (8 aa)

SKGVAHRDLKLENV
..|. |||||.||.
QQGIIHRDLKPENI