KINASE.COM

Genomics, evolution and function of protein kinases

kinase.com explores the functions, evolution and diversity of protein kinases, the key controllers of cell behavior. We focus on the kinome, the full complement of protein kinases in any sequenced genome. This includes our extensive KinBase database, and papers and supporting material for our published work from Sugen and the Salk Institute.

News

New: Jun 2008: Our analysis of the Monosiga brevicollis genome shows a huge expansion of tyrosine kinase signaling genes (TKs, PTPs, SH2s and PTBs), with little orthology to metazoan networks. The big surprise? Monosiga is a unicellular protist, and is not really supposed to have intercellular communication...

New: Apr 2008: KinBase updates include improved display of protein domains, links to external databases, and sorting of tabular output. Several moderate edits to the kinase classification scheme have also been made.

New: Dec 2007: The Tetrahymena kinome has been updated, based on an unpubished analysis of both Tetrahymena and the related Paramecium kinomes.

For other recent updates, see our What's New page.

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KinBase

KinBase holds information on over 3,000 protein kinase genes found in the genomes of human, and many other sequenced genomes. You may search the database by a variety of different gene names and accessions, or according to the sequence based classification. KinBase can also be searched by Blast.

Vertebrate kinomes

These include the major analysis of the human kinome, published in Science and a more recent PNAS paper on the mouse kinome and its comparison to human.

Model Organisms and Kinase Evolution

We have also carried out kinome analyses of several important model organisms: the nematode Caenorhabditis elegans, the fruit fly Drosophila melanogaster, the yeast Saccharomyces cerevisiae, the slime mold Dictyostelium discoideum and the ciliate Tetrahymena thermophila. Yeast and worm data were updated in a comparative Kinase Evolution analysis published in TiBS, and an update on nematode kinases, including those of C. briggsae, has been published in Wormbook.

We have also recently completed a comprehensive analysis of a wide variety of microbial kinases related to the eukaryotic protein kinase family, using genomic and metagenomic sequences.

HyperTree

HyperTree is a tool we developed to visualize large phylogenetic trees.
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