Gene SD2b2_k (S.moellendorffii)
SD2b2_k
Species: S.moellendorffii
Alias: SD2b2_k
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| SD2b2_k.AA | Protein | None | 200 | None | Fasta, JSON |
| SD2b2_k.NA | RNA | None | 597 | None | Fasta, JSON |
| SD2b2_k.kin_dom | Protein Kinase Domain | None | 42 | None | Fasta, JSON |
Protein domains of SD2b2_k.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
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| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| Kinase | SD2b2_k.AA | MLK | 99-140 | 34 | 2.2e-07 | 21.82 | In-house | 177-226 (291) | Show / Hide |
Range on Protein: 99-140 Range on HMM: 177-226/291 Sequence Identity: 34% (17 aa) FGLSK-L*QV---VTVMRGTPGYMAPEWL----HTKVTDKTDAYSFGIVL ||.|. . | . ..||. .|||| . ..|.. | | .|.|.|| FGTSRDWHQMCTNMMSNAGTYAWMAPEVIQQFRCEKYSEKCDVWSWGVVL |
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| Kinase | SD2b2_k.AA | IRAK | 110-141 | 54 | 2.9e-07 | 21.98 | In-house | 181-215 (317) | Show / Hide |
Range on Protein: 110-141 Range on HMM: 181-215/317 Sequence Identity: 54% (19 aa) VMRGTPGYMAPEWLH---TKVTDKTDAYSFGIVLL . ||| ||.|| . . | ||| |||||||| HVRGTTWYMPPEFIRDPQGQLTKKTDVYSFGIVLL |
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| Kinase | SD2b2_k.AA | IRAK | 21-49 | 48 | 1e-06 | 19.81 | In-house | 62-90 (317) | Show / Hide |
Range on Protein: 21-49 Range on HMM: 62-90/317 Sequence Identity: 48% (14 aa) HFNLVKLRGFCIQGPAALLVYEFMLNGSL | |.| | |.|.... |||..| |||| HPNIVPLYGYCTERQCHCLVYPYMPNGSL |
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| Kinase | SD2b2_k.AA | TAK1 | 106-140 | 27 | 2e-06 | 17.43 | In-house | 158-215 (284) | Show / Hide |
Range on Protein: 106-140 Range on HMM: 158-215/284 Sequence Identity: 27% (16 aa) QVVTVMRGTPGYMAPEW-----------------------LHTKVTDKTDAYSFGIVL | | .|||. .|||| . | . | | ||.||.. QMMTCNRGTCRWMAPEVRELFDFKSNRIIINQPTGFQKVFRCEKYNMKCDIYSWGIIM |
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| Kinase | SD2b2_k.AA | LRRK | 99-140 | 37 | 3e-06 | 18.37 | In-house | 222-272 (351) | Show / Hide |
Range on Protein: 99-140 Range on HMM: 222-272/351 Sequence Identity: 37% (19 aa) FGLSK----L*Q-VVTVMRGTPGYMAPEWLH----TKVTDKTDAYSFGIVL ||.| . |. . |.||.|||| . |.|.| ||||..| FGISRMFQCFHMGVAKGCVGNPGWMAPEIMRYNGEEEYTEKVDCYSFGMIL |
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| Kinase | SD2b2_k.AA | C8 | 113-140 | 32 | 3e-06 | 17.89 | In-house | 193-226 (226) | Show / Hide |
Range on Protein: 113-140 Range on HMM: 193-226/226 Sequence Identity: 32% (11 aa) GTPGYMAPEWLHT------KVTDKTDAYSFGIVL || .|.||| . . . . | .| |.|| GTWAYFAPEIEKKQDNQYKQYRIQSDLFSVGLVL |
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| Kinase | SD2b2_k.AA | TKL-ciliate1 | 113-140 | 32 | 4e-06 | 17.08 | In-house | 176-209 (279) | Show / Hide |
Range on Protein: 113-140 Range on HMM: 176-209/279 Sequence Identity: 32% (11 aa) GTPGYMAPEWL------HTKVTDKTDAYSFGIVL .|...|||| . .. | | |..|||. TTFHWMAPEQMDPHIFPNYPINEKIDIYAYGIVM |
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| Kinase | SD2b2_k.AA | MOS | 110-140 | 50 | 7e-06 | 15.24 | In-house | 197-228 (299) | Show / Hide |
Range on Protein: 110-140 Range on HMM: 197-228/299 Sequence Identity: 50% (16 aa) VMRGTPGYMAPEWLHT-KVTDKTDAYSFGIVL .. || .||||| | .| | | ||||| . YLKGTCTYMAPELLCGDTPTPKADIYSFGITM |
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| Kinase | SD2b2_k.AA | TKL | 99-140 | 25 | 8e-06 | 16.96 | In-house | 198-279 (364) | Show / Hide |
Range on Protein: 99-140 Range on HMM: 198-279/364 Sequence Identity: 25% (21 aa) FGLSKL*Q-----------------------VVTVMRGTPGYMAPEWL-----------------HTKVTDKTDAYSFGIVL ||||. . .|||..|||| | . . . |.| ||||||| FGLSRFMSQSGNMNDTMTTMMESAEHQNNRKTTMTQCGTPRWMAPEVLRGQMNYTEKVGIDEFCKGFEYSEKCDVYSFGIVL |
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| Kinase | SD2b2_k.AA | CAMK | 99-140 | 18 | 8e-06 | 13.99 | In-house | 240-324 (425) | Show / Hide |
Range on Protein: 99-140 Range on HMM: 240-324/425 Sequence Identity: 18% (16 aa) FGLSKL*QV---------------------------VTVMRGTPGYMA-PEWL---------------HTKVTDKTDAYSFGIVL ||... . . . |||.||| ||.| .. .. |.| | |..| FGFANKFDPGENNFMCSDYKGGEMHNQWTTPTEGQKMKTFCGTPEYMAAPEVLNGKGHCNMQNATDEEKPYYGPKCDMWSCGVIL |
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| Kinase | SD2b2_k.AA | Pkinase | 99-140 | 37 | 3e-05 | 19.64 | Pfam | 156-202 (293) | Show / Hide |
Range on Protein: 99-140 Range on HMM: 156-202/293 Sequence Identity: 37% (18 aa) FGLSKL----*QVVTVMRGTPGYMAPEW-L-HTKVTDKTDAYSFGIVL |||.|. . |. |||.|||||. . ... . | | .|.|..| FGLAKQFDYNNS-MTTFCGTPWYMAPEVIRGGQYYGPKVDMWSCGCIL |
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| TyrKc | SD2b2_k.AA | TyrKc | 3-185 | 14 | 0.000153 | -149.18 | SMART | 1-280 (280) | Show / Hide |
Range on Protein: 3-185
Range on HMM: 1-280/280
Sequence Identity: 14% (43 aa)
VE--------------------------IQGSSKGHSQFKAE------V--MHFNLVKLRGFCIQG-------PAALLVYEFMLNGSLDKLRLDIQVIPA
.. .. .. . | | . | |.|.| | |.|. . ..| |.| .|.|.. . .
ITLGKKLGEGAFGEVYKGTWKIQVAVKMLKEDA--REDFMREARIMCKLGGHHPNIVRLYGVCTQQGRNFMYIEPLMIVMEYMPHGDLKDYLRKHRPK--
ILR*VCESSSNIYRSRFADPPPLLSSFSV----------------------KIHLDENY------FGLSKL*QVV-------TVMR-----GTPG-----
... | ||.. . ..||. ||||. . | |. .
------------------LCMKDLLSFCWQIACGMEYLHSKNCIHRDLAARNCLVGENHTVKISDFGLSRDIYDDDQQGESKDYYRKKEHKGGKTMLPIR
YMAPEWL-HTKVTDKTDAYSFGIVL---------LDPS-----APSSSILNHP----LPPHPPH---------PRFLGETALSMFHS-----GNVVELID
|||| . . | | |.| .|||... | . . .... .| ||. | . . .. | . |...
WMAPECINYGKFTTKSDVWSFGVCMWEIFTYGQQPYPGMIQQMMSNQEVIEYVKQGYRMPQPPNDYPMSFVCCPDEMYQIMKQCWHEDPEDRPTFSEIHE
DL
..
CF
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| Kinase | SD2b2_k.AA | Pkinase_Tyr | 23-51 | 37 | 0.000392 | 14.62 | Pfam | 65-96 (270) | Show / Hide |
Range on Protein: 23-51 Range on HMM: 65-96/270 Sequence Identity: 37% (12 aa) NLVKLRGFCI-QGPA--ALLVYEFMLNGSLDK |.|.| | |. || ..| |.| .|.|.. NIVRLYGVCTDQGEPNQIYIVMEYMPHGDLLD |
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| Kinase | SD2b2_k.AA | TKL-Unique | 113-140 | 48 | 0.000476 | 10.38 | In-house | 188-218 (290) | Show / Hide |
Range on Protein: 113-140 Range on HMM: 188-218/290 Sequence Identity: 48% (15 aa) GTPGYMAPEWLHT---KVTDKTDAYSFGIVL |.. .|||| | . . | | ||||||| GSFRWMAPEVLRMNFCQYSEKSDVYSFGIVL |
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| Kinase | SD2b2_k.AA | TKL | 14-52 | 23 | 0.002793 | 7.68 | In-house | 71-129 (364) | Show / Hide |
Range on Protein: 14-52 Range on HMM: 71-129/364 Sequence Identity: 23% (14 aa) QFKAEVM------HFNLVKLRGFCIQGPA-------------ALLVYEFMLNGS-LDKL ... |.| | |.|.. |.|...| .|.|.. .|| |. | FEEEEIMMMSRLRHPNIVQFMGYCCCPPCGCVCMHPVGPWGQLCIVMEYCPGGSLLHYL |
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| Kinase | SD2b2_k.AA | TKL-Unique | 21-52 | 30 | 0.004404 | 6.93 | In-house | 55-90 (290) | Show / Hide |
Range on Protein: 21-52 Range on HMM: 55-90/290 Sequence Identity: 30% (11 aa) HFNLVKLRGFCI----QGPAALLVYEFMLNGSLDKL | |.|.. |.|. . | .| |.. |||... HPNIVHYMGYCMDHQVYPPNMCIVMEYCPGGSLYDV |
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| Kinase | SD2b2_k.AA | MLK | 21-49 | 32 | 0.039842 | 3.33 | In-house | 64-97 (291) | Show / Hide |
Range on Protein: 21-49 Range on HMM: 64-97/291 Sequence Identity: 32% (11 aa) HFN----LVKLRGFCIQGPA-ALLVYEFMLNGSL | | ....| |.| | ..| |.. .||| HPNNHPCIIQFYGVCLQPPCHFCIVMEYCEGGSL |
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| Kinase | SD2b2_k.AA | Pkinase_Tyr | 118-140 | 45 | 5.374567 | 0.61 | Pfam | 181-204 (270) | Show / Hide |
Range on Protein: 118-140 Range on HMM: 181-204/270 Sequence Identity: 45% (11 aa) MAPE-WLHTKVTDKTDAYSFGIVL |||| . . | | |.| .|||... MAPECINYGKFTTKSDVWSFGVLM |
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| Kinase | SD2b2_k.AA | Pkinase | 17-68 | 12 | 5.955237 | 0.91 | Pfam | 55-119 (293) | Show / Hide |
Range on Protein: 17-68 Range on HMM: 55-119/293 Sequence Identity: 12% (8 aa) AEVMHFNLVKLRGFCIQGPAALLVYEFMLNG----SLD-------KLRL--DIQVIPAILR*VCE ... | | |.|.... .. .| |.. .| .| . .. . ... ... ... KRLNHPNIVRLYDWFEDKDHIYMVMEYCEGGLYVMDLFDYISTWRHGCFYFSEWECKFYMYQILR |
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