n542

Species: Tetrahymena
Alias: 542, n542, 3699.m00042
External Links:
Annotation:

Classification

Group: Other

Sequence

Name Sequence Type Origin Length Description Download
n542.AA Protein None 919 None Fasta, JSON
n542.NA RNA None 2760 None Fasta, JSON

Protein domain

Protein domains of n542.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase n542.AA HisK 722-772 20 7.5e-05 14.14 In-house 1-78 (164) Show / Hide
Range on Protein: 722-772
Range on HMM: 1-78/164
Sequence Identity: 20% (18 aa)

TDEKYLKQVFINLINNSLQSLTKIQKGYT---------AVHFKLNPLD--------------------------NQLIDISIIDTG
.|.  .||. |||| |.|         .|          . .|..  .                          ..|| ||..|||
SDPNRIKQILINLISNALK--------FTQKGGIPFQGYIKIKVEQINTQNNIKYNSIFIQKIQENMVQEQLQQKNLIQISVQDTG

HATPase_c n542.AA HATPase_c 722-776 23 0.00019 17.72 Pfam 1-50 (120) Show / Hide
Range on Protein: 722-776
Range on HMM: 1-50/120
Sequence Identity: 23% (13 aa)

TDEKYLKQVFINLINNSLQSLTKIQKGYTAVHFKLNPLDNQLIDISIIDTGPGFD
.|.  |.||. ||. |...   .     . .. .. . |   . |...|.|||..
GDPDRLHQVVWNLVDNAIKHTPEG----GHITVRVHRDD-DHVRITVEDNGPGIP

Kinase n542.AA HisK 810-827 25 0.027158 4.91 In-house 125-148 (164) Show / Hide
Range on Protein: 810-827
Range on HMM: 125-148/164
Sequence Identity: 25% (6 aa)

ISQKIIGKLGPY------EKIQFE
|.......|||.       .||..
ICNNLAKGLGPEHNQNGNRGIQVQ