Gene n558 (Tetrahymena)

n558

Species: Tetrahymena
Alias: 3697.m00153, n558, 558
External Links:
Annotation:

Classification

Group: Atypical
Family: CAK

Sequence

Name Sequence Type Origin Length Description Download
n558.AA Protein None 388 None Fasta, JSON
n558.NA RNA None 1167 None Fasta, JSON

Protein domain

Protein domains of n558.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Choline_kinase n558.AA Choline_kinase 185-271 39 1.6e-24 92.57 Pfam 134-225 (225) Show / Hide 
Range on Protein: 185-271
Range on HMM: 134-225/225
Sequence Identity: 39% (37 aa)

RSEHDLILSFFPEDNNQE--QILFCHNDLLANNVLI--LNNDNSLRFIDFEYSHYNVRAFDIGNYFNESQYDYNVSEEPYFKV--AKEPITQQ
. | . . ... |....    | ||||||. .|...  .|..|.|.|||.||. || |||||.|.|.|  |||. .| |..|.  .| |   |
EKEINWLEKWL-ENFHSPGLWIVFCHNDLQYGNIMYIEDNETNCLMFIDWEYASYNYRAFDIANHFCEWMYDYHWPEPPFHKCDYSKYPNREQ
Choline_kinase n558.AA Choline_kinase 52-144 30 1.1e-18 71.58 Pfam 1-98 (225) Show / Hide 
Range on Protein: 52-144
Range on HMM: 1-98/225
Sequence Identity: 30% (30 aa)

EPKDVIFRVFGKTCEGTFINRNDETIVYQAVADVGLGPKMLGYDNDIRVE--EFL-YSNVLKQEQMNTPLYRRKVAITLAEFHQIEI---KQITRQPML
.|. ...|..|.  |  ||.| .|....   .. |||||..|.... |||  ||. .|. |..|... | ...|.|  ..||| |..   . ... |..
HPRKYLVRIYGQGTE-HFIDRETEIVNFECLSEHGLGPKLYGFFPNGRVEVTEFIEHSRTLSCEDIRDPEISKKIAKRMREFHDIDMCHPHPWKKMPWC
APH n558.AA APH 30-243 13 1.4e-08 30.17 Pfam 1-212 (248) Show / Hide 
Range on Protein: 30-243
Range on HMM: 1-212/248
Sequence Identity: 13% (33 aa)

SIERMT-GITNQTFRFTHVQEEIEPKDVIFRVFGKTCEGTFINRNDETIVYQAVADVGL---GPKMLGYDNDIRVEEF---LYSNVLKQEQMN-------
.... . | .|.|...|. . .   .....|.. .    .  .. .|  .....|. |.    |. |... |  ....   |.. .  ..  .       
WWRPISGGWSNRTYYRTTDD-R---PRYVLRRYPPP--WWAEELHREHRWLRHLAAHGIPVPVPRVLWGCTDDEFHGWPWYLMEWLPGEDLWRWHALHCA

-TPLYRRKVAITLAEFHQIEIKQITRQPMLKQ-VYTDPSIIGAVEDKINKTELFT---QEELGL--IEEMRRVWFSRSEHDLILSFFPEDNNQEQILFCH
 .| . ...| .||..||. . .   . .... .| .. .. .      . |.|    |..|    ...... |                    .  .||
QRPALLEALARFLARLHQVDPPDCPFAWWGRWRLYHWRQLMDWCR-CWVDPEWFDEDRQWWLWQRLWAWLEAHWP-------------------PPCWCH

NDLLANNVLILNNDNSLR---FIDFEYSHYNVRAFDIG
.|. ..||..  ...  |   .||......  ...|..
GDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYDLA