Gene n623 (Tetrahymena)

n623

Species: Tetrahymena
Alias: 623, 3687.m00120, n623
External Links:
Annotation:

Classification

Group: Atypical
Family: CAK

Sequence

Name Sequence Type Origin Length Description Download
n623.AA Protein None 395 None Fasta, JSON
n623.NA RNA None 1188 None Fasta, JSON

Protein domain

Protein domains of n623.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Choline_kinase n623.AA Choline_kinase 54-274 25 1e-26 99.85 Pfam 1-225 (225) Show / Hide 
Range on Protein: 54-274
Range on HMM: 1-225/225
Sequence Identity: 25% (60 aa)

SNKIAVIRIFGTV-EGLVDKAKEHTIFNELGKNGAGPKCLAYGGSWRIE--EYIDQGVHPDLTTMRSKTYRRLIAKYLSQFHKIQL------SNIPREEP
...  ..||.|   | ..|   |. .|. | ..| ||| ...    |.|  |.| ..   .   .| . ....||| . .||.| .      .. |.   
HPRKYLVRIYGQGTEHFIDRETEIVNFECLSEHGLGPKLYGFFPNGRVEVTEFIEHSRTLSCEDIRDPEISKKIAKRMREFHDIDMCHPHPWKKMPWCWD

SIKKYLDTRTESFKPFFDKMKQGELFSSEEKEKLKEFEEIVSEKEVEFLYSILPKSE---TRLCHNDLNNLNIFYNVNTSSGNRLKFIDFEYCSYNYCAY
 ..|..... .. .  |...|. ...... ..  ||.... .. |       . .|      .|||||   || |    ...|.| |||.||.||||.|.
MMRKWFNLGNQEAQWHFEVNKRKHMKCINWYWLEKEINWLEKWLE-------NFHSPGLWIVFCHNDLQYGNIMYI-EDNETNCLMFIDWEYASYNYRAF

DIANYMNESHFNYNFPEDPYYDIVKENIFKIDD
||||. .| ...|. || |....  ..  . ..
DIANHFCEWMYDYHWPEPPFHKCDYSKYPNREQ