Gene ABC1-B_a (S.moellendorffii)

ABC1-B_a

Species: S.moellendorffii
Alias: ABC1-B_a
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B_a.AA Protein None 507 None Fasta, JSON
ABC1-B_a.NA RNA None 1524 None Fasta, JSON

Protein domain

Protein domains of ABC1-B_a.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1-B_a.AA ABC1 137-250 39 6.5e-46 158.85 In-house 1-123 (123) Show / Hide 
Range on Protein: 137-250
Range on HMM: 1-123/123
Sequence Identity: 39% (49 aa)

EEFGRTPGDMFHEFDEKPLAAASLAQVHHAWLSENEEVAVKVQYPGLQRQFEIDISTMAFLSKCVAWLFP-----DYQFEWLVPEFEKNL---LNFAREA
.. |  . | | ||||||.||||.|||| | | . ..||||||.||.. |.  || .| ...| . |.||     .. ..|.| ||.|.|   ..| .||
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEA

RSAERATANFA--NKKEVKIPSVF
| ||.. ..|.  .......| ..
RNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-B_a.AA ABC1 137-250 42 1.7e-45 155.25 Pfam 1-126 (126) Show / Hide 
Range on Protein: 137-250
Range on HMM: 1-126/126
Sequence Identity: 42% (54 aa)

EEFGRTPGDMFHEFDEKPLAAASLAQVHHAWLSE-NEEVAVKVQYPGLQRQFEIDISTMAFLSKCVAWLFPD-----YQFEWLVPEFEKNL---LNFARE
||.|. . ..| ||||.|.||||.||||.| |    ||||||||.||...... || .| .. | |. .||.     ....|.| ||.|||   |.. ||
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

ARSAERATANFANK---KEVKIPSVF
|...||   ||..    ..|..| |.
AKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-B_a.AA ABC1-B 137-250 40 1.3e-43 151.17 In-house 1-125 (125) Show / Hide 
Range on Protein: 137-250
Range on HMM: 1-125/125
Sequence Identity: 40% (51 aa)

EEFGRTPGDMFHEFDEKPLAAASLAQVHHAWLSENEEVAVKVQYPGLQRQFEIDISTMAFLSKCVAWLFP------DYQFEWLVPEFEKNL---LNFARE
.  |  . | | |||.||.||||||||| | | . |.||||||.| |. ||  |. .| .. | . |.||      .. | |.. |..|||   |.|  |
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNE

ARSAERATANFA---NKKEVKIPSVF
|| ||..   |.   .......| ..
ARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-B_a.AA ABC1-A 150-182 60 3.5e-14 45.65 In-house 1-33 (216) Show / Hide 
Range on Protein: 150-182
Range on HMM: 1-33/216
Sequence Identity: 60% (20 aa)

FDEKPLAAASLAQVHHAWLSENEEVAVKVQYPG
| |.| |.||  ||| | |    |||||.||||
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPG
Kinase ABC1-B_a.AA ABC1-C 174-314 34 5.8e-11 30.02 In-house 1-146 (307) Show / Hide 
Range on Protein: 174-314
Range on HMM: 1-146/307
Sequence Identity: 34% (52 aa)

VAVKVQYPGLQRQFEIDISTMAFLSKCVAWLFPDYQFEWL---VPEFEKNL---LNFAREARSAERATANFANKKEVKIPSVFWDYTTNRVLTMQFMHGS
|||||  |||  |  .|.  |   |. .  | |  ..  |   | |||| .   .    ||   |    || | | || |     . |  ||   .    
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVL-PGIKWLSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYEESV

KVDDVESMEKAGID---SKQVSRVLLEIFAEMIFCHGVVHGDPHPGNILV
    | |  .|||     ... |. . .   |||    || | |||||||
---PVSSYQQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILV
Kinase ABC1-B_a.AA ABC1-A 223-273 31 3.5e-05 14.16 In-house 77-127 (216) Show / Hide 
Range on Protein: 223-273
Range on HMM: 77-127/216
Sequence Identity: 31% (16 aa)

NFAREARSAERATANFANKKEVKIPSVFWDYTTNRVLTMQFMHGSKVDDVE
.  |||| .    .  ..   . .| |.  |.| |||||  | |  .|  .
DYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPIDQCQ
Kinase ABC1-B_a.AA S_TKc 149-462 11 0.000274 -114.02 SMART 1-231 (231) Show / Hide 
Range on Protein: 149-462
Range on HMM: 1-231/231
Sequence Identity: 11% (40 aa)

EFDEKPLAAASLAQVHHAWLSE-NEEVAVKVQYPGLQRQFEIDISTMAFLSKCVAWLFPDYQFEWLVPEFEKNLLNFAREARSAERATANFANKKEVKIP
    ...   . ..|. ..  . ...||.|.                                            .. || .  ..       .  ||. 
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK-----------------------------------------EHIRREIQILKK-----HHPNIVKLY

SVFWDYTTNRVLTMQFMHG---SKVDDVESMEKAG----IDSKQVSRVLLEIFAEMIFCH--GVVHGDPHPGNILVSHNPARGSKHNFHIVILDHGLYRE
 || |  ..  . | .. |   .  |  ... . |    ..  .. ... .|.  . .||  |..| |  | |||...          || | | || |.
DVFQD--DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDE----------HIKICDFGLARQ

LDENFRRNFCNLWKAMITSDPAEMEKSGLQ---------LGAGEYSR----------FLPVILTGRTLDSKSGLGKGMSPEERTRLRDEVRKFSMGDISY
|                        ..            |    |..           |   |.|... .           .  .. . ..         
L------------------------TTFCGTPWYMAPEVL---GYGKCKCDWWSCGCILYEMLCGYPPFP-----------QMQMMFKKIG---------

FMEGLSRDFLIVLRTDGLLRSIVHKLGAP---RRLRLETYAR-------YALL
               .  ..... |.      .|.      .          .
---------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF