ABC1-B-p1_a-2

Species: S.moellendorffii
Alias: ABC1-B-p1_a-2
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-B-plant1

Sequence

Name Sequence Type Origin Length Description Download
ABC1-B-p1_a-2.AA Protein None 1273 None Fasta, JSON
ABC1-B-p1_a-2.NA RNA None 3822 None Fasta, JSON

Protein domain

Protein domains of ABC1-B-p1_a-2.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-B-p1_a-2.AA ABC1 265-313 62 1.3e-27 95.16 Pfam 1-50 (126) Show / Hide
Range on Protein: 265-313
Range on HMM: 1-50/126
Sequence Identity: 62% (31 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKD-GRDVVVKVQHQGIKE
..||.|..|.|.|||..|.|.|||||||||| || |..|.||||| |.|.
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKK

Kinase ABC1-B-p1_a-2.AA ABC1 265-313 61 3.1e-25 90.18 In-house 1-48 (123) Show / Hide
Range on Protein: 265-313
Range on HMM: 1-48/123
Sequence Identity: 61% (30 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
. || . .. ||||| ||.|.|||||||||..|||. |.||||| |..|
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGVRE

Kinase ABC1-B-p1_a-2.AA ABC1-B 265-313 55 7.7e-23 80.02 In-house 1-48 (125) Show / Hide
Range on Protein: 265-313
Range on HMM: 1-48/125
Sequence Identity: 55% (27 aa)

KQLGKPLDELFSEFDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
| || . .. ||||| ||.|.||.||||||  .||. | |||||  ...
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKVQHPWLRK

Kinase ABC1-B-p1_a-2.AA ABC1-A 278-313 55 7.6e-16 51.47 In-house 1-36 (216) Show / Hide
Range on Protein: 278-313
Range on HMM: 1-36/216
Sequence Identity: 55% (20 aa)

FDRKPLATASIAQVHRARMKDGRDVVVKVQHQGIKE
|  .| | ||| |||.|..|||| |.||.|  |..|
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGVAE

ABC1 ABC1-B-p1_a-2.AA ABC1 329-390 25 1.9e-10 37.43 Pfam 49-118 (126) Show / Hide
Range on Protein: 329-390
Range on HMM: 49-118/126
Sequence Identity: 25% (18 aa)

RESLVQDLYNARVIVEWVAWAEPD-----YDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLKSW---T
.... .|.|| |....||.  .|.     .|.  ..|| ....|.||.. .||.|......|.. |   .
KKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRREAKNMERFRENFRHWHRQP

Kinase ABC1-B-p1_a-2.AA ABC1-B 329-387 27 4.9e-08 26.22 In-house 47-111 (125) Show / Hide
Range on Protein: 329-387
Range on HMM: 47-111/125
Sequence Identity: 27% (18 aa)

RESLVQDLYNARVIVEWVAWAEP------DYDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLK
|..   |.   ...|. . |. |      .. | ...||     ||||.|. ||.| .|... .|
RKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYNEARNAEKCRQMFK

Kinase ABC1-B-p1_a-2.AA ABC1 329-387 29 5.6e-07 24.47 In-house 47-110 (123) Show / Hide
Range on Protein: 329-387
Range on HMM: 47-110/123
Sequence Identity: 29% (19 aa)

RESLVQDLYNARVIVEWVAWAEP-----DYDFGPVLDEWCREVPQELNFNQEAENTKKVAHNLK
||.   |. | ...|. . |. |     .. . ...||  .| |.|..|| ||.| .|.....|
REQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNEARNAEKCRQLFK

Beta-lactamase ABC1-B-p1_a-2.AA Beta-lactamase 622-1044 18 1.6e-51 179.74 Pfam 1-358 (358) Show / Hide
Range on Protein: 622-1044
Range on HMM: 1-358/358
Sequence Identity: 18% (88 aa)

LHQLLREMHK-QQRILGVQVCAYKDGKVIVDTAA-GYLGKYDPRPVRCDSLFLVFSATKGVTAALLHWLADHGKLSLAEKI-----S--------SIWPE
. .|.|.. . |..|.|..|. |.||||..|... ||  . ..||.. |..| ..|.|| .||.... |.. |||.| ...     |          |||
FDRLIRQFMAVQHHIPGMAVAVYHDGKVVYDRWFRGYADRETGRPWTPDTRFRIASVTKTFTATAVMQLVERGKLDLDDPVYTDDLSHNYSPVTEKYWPE

FAENHKDACTVAHALNHTCGL-------QNALYDVLSKNPLAMCDWSEMLKLIAAAKPESPPGQDQMYHGRSFGWICGGIAEKAT-G-KTFQQLIEEAFV
|.  .|.. ||.| |.|| ||        .. ||             .|.. .|...|..|||   ||.  ..||. | |.|..| | ... |...| . 
FPG-GKQPMTVRHLLTHTSGLPYYPPDMWWDAYDW-----------EQMVRYLAQWPPWWPPGTRWMYSNTGYGWLLGEIVERVTQGVQPYEQYMRERIF

TPLKVTGEFYVGIPPGVEERLASLT----MDPEELKNIPAASHLSTLQVGSTSDGVGPASLEDFLTNGSPLSLSSLPSLFNMLFIRRATIPSANGHFSAR
.||    ..... |.  ..|.|..      ...     |.  .                                              .|..... .||
RPL-GMWHTHFNPPEPEDPRYAHGYYGHGPPRV-PP-WPMGAY----------------------------------------------QPAGGMYSTAR

ALARFYAMLASGGRVPPGTSSSKPPLGSHAHRPHLGGSSRSLSSDLSGGQIHFQEEEDAPAKIFTSGDIHDAFVGGGRYSGLVARDGE---KFGLGFWKH
 .||...||  .|... ...  ...   ..                                              ... .   |.|     .|.    .
DMARWMQML-ADGVALNQGRLLSEW-RQQM----------------------------------------W-WMH-NYTFPPGMRQGYGWWGYGWMVNDK

KTADTGRKKMAFGHSG---IGGSFGYCDPDN---------DFAMVITVTKMT---FGQVSGDIVRLVCS
  .     . ..||.|    .|.. . |||.         . ..|. ...|    .. .  . ..|.. 
TGG-----PGWWGHTGATGGYGTYMWFDPDRAVVWPPNRANIGVVVLTNRMHPNPDR-EDWRYIALAAA

NIF ABC1-B-p1_a-2.AA NIF 1125-1235 25 2.5e-14 54.02 Pfam 46-189 (189) Show / Hide
Range on Protein: 1125-1235
Range on HMM: 46-189/189
Sequence Identity: 25% (38 aa)

PHLDEFLYALALFAEVVLFSSAP--YAARVVKQLDPR-GTRF--RYVL---GLSDCT-------LWHDT----RL--GK---EVVVLVDDDPGFFCQPGS
|..||||  .. . |.|.....   ||  |....||  .. |  ...|      .|.        .       .|  .    . |..||..|  .     
PYCDEFLQHMSKYYEIVIWTASMKEYADPVIDYIDPKSKKYFDGHHRLICWYREHCWLYRNGGNYYV-KKDLSILWYNRWDLSRVIIVDNSPHSW-LQ-P

GNEIVIGK-FTG-----Q-RSD--DELLKRLPVL-QSLA-QL-DDVR
 | | |   . |        .|   |||. || | ..|| |  ||||
DNGIPIPPYWYGYHDDDDSPDDFWNELLDLLPFLIEYLALQCLDDVR