Gene ABC1-C-1 (S.moellendorffii)

ABC1-C-1

Species: S.moellendorffii
Alias: ABC1-C-1
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-C

Sequence

Name Sequence Type Origin Length Description Download
ABC1-C-1.AA Protein None 611 None Fasta, JSON
ABC1-C-1.NA RNA None 1836 None Fasta, JSON

Protein domain

Protein domains of ABC1-C-1.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1-C-1.AA ABC1-C 300-445 43 4.3e-40 122.8 In-house 1-146 (307) Show / Hide 
Range on Protein: 300-445
Range on HMM: 1-146/307
Sequence Identity: 43% (64 aa)

VAVKVRHPGVTEVIRRDFILINWVVKACSHFSGLRYLRLEDSVQQFAVFMLTQVDLAREAAHLSRFLYNFRSWKDVSFPKPLYPLVHPAVLVETYERGES
||||| |||.   .  | .|.    .      |...| | . |  |   |  |.||  ||  |  |  |||  | | || || | |   |||||||    
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKWLSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYEESVP

VSRFVDSPKRSHINSALAHIGTHTLLKMLLVDNFIHADLHPGNILV
|| .        .   .| .|   ||||. ||||.|||||||||||
VSSYQQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILV
ABC1 ABC1-C-1.AA ABC1 259-381 36 4.8e-38 130.2 Pfam 1-126 (126) Show / Hide 
Range on Protein: 259-381
Range on HMM: 1-126/126
Sequence Identity: 36% (47 aa)

GAFGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKACSHFSGL---RYLRLEDSVQQFAVFMLTQVDL
 ..|. .||.|. |.|||.|..| ||||||.|. .     .||||| |||| . ..||. .. |..|.   |.     ....|.  |..|.  .   .|.
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDD---GEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDY

AREAAHLSRFLYNFRSW---KDVSFPKPL
 |||.. .|| .||| |   ..|  ||  
RREAKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-C-1.AA ABC1 261-381 34 1.1e-24 88.33 In-house 3-123 (123) Show / Hide 
Range on Protein: 261-381
Range on HMM: 3-123/123
Sequence Identity: 34% (43 aa)

FGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKACSHFSG---LRYLRLEDSVQQFAVFMLTQVDLAR
 |  .|. |. |.|.|.|. | ||||||.|.. |    |||||| |||| | |. |  ..  |||.|. | .   .  ..|.. |. |   .  . |. .
LG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQ---TVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNN

EAAHLSRFLYNFR--SWKDVSFPKPL
||. . ..  .|.   |... .|...
EARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-C-1.AA ABC1-B 259-327 40 3e-19 66.99 In-house 1-64 (125) Show / Hide 
Range on Protein: 259-327
Range on HMM: 1-64/125
Sequence Identity: 40% (28 aa)

GAFGKRIEELFEDFEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVIRRDFILINWVVKAC
   |  ||. |. |...|.|. | ||||||.| . |    |||||| || . . .. |  ..  .||.|
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GE---TVAVKVQHPWLRKQFHYDMMMMELFVKVC
Kinase ABC1-C-1.AA ABC1-A 272-313 52 6.7e-10 30.67 In-house 1-38 (216) Show / Hide 
Range on Protein: 272-313
Range on HMM: 1-38/216
Sequence Identity: 52% (22 aa)

FEEEPLASGSVAQVHRAVLRGQGKKPVTVAVKVRHPGVTEVI
||| | |  |  |||.|||.. |..   ||||.  ||| | |
FEEMPFACASIGQVHQAVLKD-GRE---VAVKIQYPGVAESI
Kinase ABC1-C-1.AA CAMK 276-304 23 0.000616 7.78 In-house 1-38 (425) Show / Hide 
Range on Protein: 276-304
Range on HMM: 1-38/425
Sequence Identity: 23% (9 aa)

PLASGSVAQVHRAVLR-GQGKK--------PVTVAVKV
 | .|| ..|.... .  .||.        .. ||.|.
TLGRGSFGKVKLCIHKNTTGKERVHHIYTNGQKVAIKI
Kinase ABC1-C-1.AA Worm5 433-445 53 0.000636 7.78 In-house 127-139 (260) Show / Hide 
Range on Protein: 433-445
Range on HMM: 127-139/260
Sequence Identity: 53% (7 aa)

FIHADLHPGNILV
|||.|.| .||..
FIHRDCHWQNIMF
Kinase ABC1-C-1.AA ABC1-C 465-588 29 3.4e-10 27.57 In-house 182-307 (307) Show / Hide 
Range on Protein: 465-588
Range on HMM: 182-307/307
Sequence Identity: 29% (37 aa)

LVFLDVGMTAELSNKDRRTLLEFFKGIAMRDGRKTAECALQFSELQTCPDPKGFVREVEDCFKD--WNAMDSAVLHTGDCIQELLERVRRHKVNIDGDVC
|| || |. |||   | |     |  . |  | . ||  |       | |  ||  |.         | .    ||    .      .  ||| ..    
LVLLDAGIVAELQAPDLRNFRAVFMAVVMGQGQRVAELILHHARASECRDVEGFKTEMAMLVTQARKNTITLEKLHVSSLLSSVFKLLMTHKVKLESNFA

TVIVTTLVLEGWQRKLDPEYNIMETL
 ..   .||||  | |||   |.|  
SIVFAIMVLEGLGRSLDPKLDILEAA