Gene ABC1-C-2 (S.moellendorffii)

ABC1-C-2

Species: S.moellendorffii
Alias: ABC1-C-2
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-C

Sequence

Name Sequence Type Origin Length Description Download
ABC1-C-2.AA Protein None 441 None Fasta, JSON
ABC1-C-2.NA RNA None 1326 None Fasta, JSON

Protein domain

Protein domains of ABC1-C-2.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
Kinase ABC1-C-2.AA ABC1-C 142-288 40 3.8e-37 113.42 In-house 1-147 (307) Show / Hide 
Range on Protein: 142-288
Range on HMM: 1-147/307
Sequence Identity: 40% (60 aa)

VAVKVRHPRVSTVIQRDFVIMNWLARMSTKFSSLEHLQLDKTVQQFATFMTKQVDLTLEAAHLMRFIYNFRQWRNVSFPRPIYPLVHPEVLVETFEEGRS
||||| || .   .  | ..|   .|.      .  | |   |  |   | .|.||  ||  |  |  |||  . | || |. | |  ||||||.||   
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVLPGIKWLSLPEIVEEFEKLMVQQIDLRYEAQNLEHFQVNFRNVKAVKFPTPLRPFVTREVLVETYEESVP

IQEFIDEGPRTKLHSQLARLGSSLLLKMLLSDNFIHGDLHPGNMFVK
.  .   |    |  ..||||  .||||.  |||.| ||||||. |.
VSSYQQAGIPVDLKRKIARLGINMLLKMIFVDNFVHADLHPGNILVQ
ABC1 ABC1-C-2.AA ABC1 101-223 34 1.3e-36 125.42 Pfam 1-126 (126) Show / Hide 
Range on Protein: 101-223
Range on HMM: 1-126/126
Sequence Identity: 34% (45 aa)

KAFHLPLDRLFEEFSEKPIASGSIAQVHKAVLRTKGQKPLVVAVKVRHPRVSTVIQRDFVIMNWLARMSTKFSSL---EHLQLDKTVQQFATFMTKQVDL
.... |.. .|.||.|.|||..||||||.|.|.. |..   ||||| || |   . ||. .| |.|.  ..|.       ..|...|..|.  . . .|.
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEE---VAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDY

TLEAAHLMRFIYNFRQW---RNVSFPRPI
..||..  || .||| |    .|  |. .
RREAKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-C-2.AA ABC1 101-223 31 9.1e-21 75.32 In-house 1-123 (123) Show / Hide 
Range on Protein: 101-223
Range on HMM: 1-123/123
Sequence Identity: 31% (40 aa)

KAFHLPLDRLFEEFSEKPIASGSIAQVHKAVLRTKGQKPLVVAVKVRHPRVSTVIQRDFVIMNWLARMSTKFSS---LEHLQLDKTVQQFATFMTKQVDL
.    . .  |.||.|||.|. ||||||.|.|.. ||.   ||||| ||.| . |. |   |  . .|.  |     .  . |...|. | . . .. |.
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQT---VAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDF

TLEAAHLMRFIYNFR--QWRNVSFPRPI
. ||. . ..  .|.   | .. .||..
NNEARNAEKCRQLFKKFHWPFFYVPRIH
Kinase ABC1-C-2.AA ABC1-B 101-162 40 1.3e-16 57.35 In-house 1-57 (125) Show / Hide 
Range on Protein: 101-162
Range on HMM: 1-57/125
Sequence Identity: 40% (25 aa)

KAFHLPLDRLFEEFSEKPIASGSIAQVHKAVLRTKGQKPLVVAVKVRHPRVSTVIQRDFVIM
|    . .  |.||..||||. |.||||.|.| . |.    ||||| ||.. . .  |   |
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GET---VAVKVQHPWLRKQFHYDMMMM
Kinase ABC1-C-2.AA ABC1-A 114-149 50 6.5e-07 20.24 In-house 1-32 (216) Show / Hide 
Range on Protein: 114-149
Range on HMM: 1-32/216
Sequence Identity: 50% (18 aa)

FSEKPIASGSIAQVHKAVLRTKGQKPLVVAVKVRHP
| |.| |  || |||.|||.  |..   ||||.  |
FEEMPFACASIGQVHQAVLKD-GRE---VAVKIQYP
Kinase ABC1-C-2.AA Worm7 275-302 46 0.000212 10.51 In-house 123-150 (263) Show / Hide 
Range on Protein: 275-302
Range on HMM: 123-150/263
Sequence Identity: 46% (13 aa)

FIHGDLHPGNMFVKLGKKVPQLILLDVG
||| |.|  |  | | .|| ...|.| |
FIHRDVHSQNVLVTLKNKVCKMVLIDFG
Kinase ABC1-C-2.AA ABC1-C 384-418 31 0.003314 5.32 In-house 273-307 (307) Show / Hide 
Range on Protein: 384-418
Range on HMM: 273-307/307
Sequence Identity: 31% (11 aa)

RVNLDGEVCTVMVTVVILEGWQRKLDMSLDIMRMV
.| |.     ..  ...|||  | ||  |||.   
KVKLESNFASIVFAIMVLEGLGRSLDPKLDILEAA