Gene ABC1-F_d (S.moellendorffii)
ABC1-F_d
Species: S.moellendorffii
Alias: ABC1-F_d
External Links:
Annotation:
Sequence
| Name | Sequence Type | Origin | Length | Description | Download |
|---|---|---|---|---|---|
| ABC1-F_d.AA | Protein | None | 640 | None | Fasta, JSON |
| ABC1-F_d.NA | RNA | None | 1923 | None | Fasta, JSON |
Protein domains of ABC1-F_d.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.
Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.
| Domain | Protein name | Domain Name | Range | Identity (%) | Significance | Score | Profile Source | Profile Range (length) | Alignment |
|---|---|---|---|---|---|---|---|---|---|
| ABC1 | ABC1-F_d.AA | ABC1 | 136-255 | 30 | 3.8e-35 | 120.46 | Pfam | 1-126 (126) | Show / Hide |
Range on Protein: 136-255 Range on HMM: 1-126/126 Sequence Identity: 30% (38 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVV--TT-NVVALLDEFASRVYQELNYVQE .|||. .|...... . |.||||..||..|.|.. || ||||||.||..... .|. ..| . ...... . . ....|||......||.| .| EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE GFNAKKFMELYGDR---VDVKVPSIC . |...| |. . .|.|| . AKNMERFRENFRHWHRQPWVYVPKVY |
|||||||||
| Kinase | ABC1-F_d.AA | ABC1-B | 136-255 | 31 | 5.5e-21 | 73.28 | In-house | 1-125 (125) | Show / Hide |
Range on Protein: 136-255 Range on HMM: 1-125/125 Sequence Identity: 31% (40 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYV----DVVTTNVVALLDEFASRVYQELNYVQ . || |||.| . |.||||| || .|.| || |||||| | . ...| .... . .. | | . ...||. . .|||. KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYN EGFNAKKFMELYG---DRVDVKVPSIC |. ||.| .. .. ..|| | EARNAEKCRQMFKKFKHFDFLYVPRIH |
|||||||||
| Kinase | ABC1-F_d.AA | ABC1 | 136-202 | 41 | 3.8e-19 | 69.95 | In-house | 1-65 (123) | Show / Hide |
Range on Protein: 136-202 Range on HMM: 1-65/123 Sequence Identity: 41% (28 aa) SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLID ..|| ||| |. . |.||||..|| .|.|.. |. |||||| ||... |. | .... | .. | QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCD |
|||||||||
| Kinase | ABC1-F_d.AA | ABC1-A | 142-187 | 45 | 1.3e-11 | 36.72 | In-house | 1-38 (216) | Show / Hide |
Range on Protein: 142-187 Range on HMM: 1-38/216 Sequence Identity: 45% (21 aa) LEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAI .|.. | |.|| ||| .|||.. | ||||.| ||.|. | FEEM-------PFACASIGQVHQAVLKD-GREVAVKIQYPGVAESI |
|||||||||
| Kinase | ABC1-F_d.AA | MST | 158-178 | 52 | 6e-06 | 14.91 | In-house | 11-31 (254) | Show / Hide |
Range on Protein: 158-178 Range on HMM: 11-31/254 Sequence Identity: 52% (11 aa) SLGQVYKAVLRSTGEVVAVKV | |.||||. ..||..||.|. SYGSVYKAIHKQTGKIVAIKM |
|||||||||
| Kinase | ABC1-F_d.AA | APH | 309-369 | 20 | 6e-06 | 21.08 | Pfam | 174-248 (248) | Show / Hide |
Range on Protein: 309-369 Range on HMM: 174-248/248 Sequence Identity: 20% (15 aa) HADPHPGNLLAT--PE-GKL-AFIDFGMMSDTPPQARFAIIG-H-----VVHMVNRDYEAMA----RDYYALDFL |.| ||||.. . |. |.. ..||.... .| . .|.. | . .| . .|. ..... HGDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYDLAMCWWHWWCRWFWPEWRDAYGRAYCRHDPDWHRMRWW |
|||||||||
| Kinase | ABC1-F_d.AA | ABC1 | 215-255 | 27 | 3e-05 | 17.79 | In-house | 81-123 (123) | Show / Hide |
Range on Protein: 215-255 Range on HMM: 81-123/123 Sequence Identity: 27% (12 aa) LLDEFASRVYQELNYVQEGFNAKKFMELYG--DRVDVKVPSIC ..||| . ..|... |. ||.|. .| .. ...|| | FVDEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH |
|||||||||
| Kinase | ABC1-F_d.AA | S_TKc | 148-497 | 13 | 7.3e-05 | -105.57 | SMART | 1-231 (231) | Show / Hide |
Range on Protein: 148-497
Range on HMM: 1-231/231
Sequence Identity: 13% (48 aa)
SITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVVTTNVVALLDEFASRVYQELNYVQEGFNAKKFMELYGDRV
.. . |.|||.. ..||..||.|. . ....|.. .. . . ||. .
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK----------------------------------------EHIRREIQILKK--HHPNIVKLYDVFQ
DVKVPSICWDYTSVKVLTMEWIDG------TKLSEQK-------VIESQGLNVLKMVDIGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFIDFGMMS
| . . || .|| . . ... | . ... | | | . . | | | | |.| . . .|||.
D-----------DHLYMVMEYCDGDLGDLFDYIKKRGRHGLRFPFPE-HARFYMYQ----ICCALEYCHSHGIIHRDLKPENILLDE--HIKICDFGLAR
DTPPQARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVSPIVPALKSFFDDVLDATVSELNFKT-IVD--GLGAVLYQYPFDVPPYYALILRSLTVL
. ..| | | . . .| .| .|| ||.. . . . ..
QL------------------TTFCGTPWYMAPEVL----------------------------GYGKCKCDWWSCGCILYEMLCGYPPFP-QMQMMFKKI
EGLALYTDPNFKVLAAAYPYFAKRLLTDPNPYLRDALVELLFKDGSFRWQRLENLL-VQGRKSSDFV
| ..| . .| || . |. | | . |. ..
G----------------------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
|
|||||||||
| Kinase | ABC1-F_d.AA | YSK | 158-178 | 47 | 7.9e-05 | 10.07 | In-house | 11-31 (257) | Show / Hide |
Range on Protein: 158-178 Range on HMM: 11-31/257 Sequence Identity: 47% (10 aa) SLGQVYKAVLRSTGEVVAVKV | | |||.. . |..|||.|. SFGEVYKGIDNRTQRVVAIKI |
|||||||||
| Kinase | ABC1-F_d.AA | ABC1-A | 225-274 | 32 | 0.000109 | 12.45 | In-house | 74-123 (216) | Show / Hide |
Range on Protein: 225-274 Range on HMM: 74-123/216 Sequence Identity: 32% (16 aa) QELNYVQEGFNAKKFMELYGDRVDVKVPSICWDYTSVKVLTMEWIDGTKL .| .| | ..|| .| | .. || . |.. .||||| . |. . WECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPI |
|||||||||
| Kinase | ABC1-F_d.AA | RAD53 | 160-177 | 38 | 0.000348 | 7.79 | In-house | 13-30 (305) | Show / Hide |
Range on Protein: 160-177 Range on HMM: 13-30/305 Sequence Identity: 38% (7 aa) GQVYKAVLRSTGEVVAVK |.|..|. ..|...||.| GTVKLAYEKKTCQKVAIK |
|||||||||
| Kinase | ABC1-F_d.AA | STE11 | 160-177 | 55 | 0.000676 | 10.31 | In-house | 13-30 (303) | Show / Hide |
Range on Protein: 160-177 Range on HMM: 13-30/303 Sequence Identity: 55% (10 aa) GQVYKAVLRSTGEVVAVK |.|||.. .|||..||| GTVYKCMNVDTGELMAVK |
|||||||||
| Kinase | ABC1-F_d.AA | LISK | 160-177 | 55 | 0.000862 | 7.97 | In-house | 8-25 (296) | Show / Hide |
Range on Protein: 160-177 Range on HMM: 8-25/296 Sequence Identity: 55% (10 aa) GQVYKAVLRSTGEVVAVK |.||| .| ||.|.|.| GKVYKGTHRQTGQVMAIK |
|||||||||
| Kinase | ABC1-F_d.AA | CRK7 | 160-177 | 66 | 0.000887 | 8.68 | In-house | 13-30 (343) | Show / Hide |
Range on Protein: 160-177 Range on HMM: 13-30/343 Sequence Identity: 66% (12 aa) GQVYKAVLRSTGEVVAVK ||||||. .||| || | GQVYKAKNKHTGEMVALK |
|||||||||