ABC1-F_e

Species: S.moellendorffii
Alias: ABC1-F_e
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-F

Sequence

Name Sequence Type Origin Length Description Download
ABC1-F_e.AA Protein None 727 None Fasta, JSON
ABC1-F_e.NA RNA None 2184 None Fasta, JSON

Protein domain

Protein domains of ABC1-F_e.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

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Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-F_e.AA ABC1 201-320 30 3.8e-35 120.46 Pfam 1-126 (126) Show / Hide
Range on Protein: 201-320
Range on HMM: 1-126/126
Sequence Identity: 30% (38 aa)

SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVV--TT-NVVALLDEFASRVYQELNYVQE
.|||. .|...... . |.||||..||..|.|.. || ||||||.||..... .|. ..| . ......      .  . ....|||......||.| .|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

GFNAKKFMELYGDR---VDVKVPSIC
. |...| |.  .     .|.|| . 
AKNMERFRENFRHWHRQPWVYVPKVY

Kinase ABC1-F_e.AA ABC1-B 201-320 31 5.5e-21 73.28 In-house 1-125 (125) Show / Hide
Range on Protein: 201-320
Range on HMM: 1-125/125
Sequence Identity: 31% (40 aa)

SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYV----DVVTTNVVALLDEFASRVYQELNYVQ
. ||   |||.|   . |.||||| || .|.|   || |||||| | .   ...| .... . .. |       |  .    ...||. .  .|||.   
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHDEIQKNLPQELDFYN

EGFNAKKFMELYG---DRVDVKVPSIC
|. ||.|  ..     ..  ..|| | 
EARNAEKCRQMFKKFKHFDFLYVPRIH

Kinase ABC1-F_e.AA ABC1 201-267 41 3.8e-19 69.95 In-house 1-65 (123) Show / Hide
Range on Protein: 201-267
Range on HMM: 1-65/123
Sequence Identity: 41% (28 aa)

SELGARLEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLID
..||   ||| |.  . |.||||..|| .|.|.. |. |||||| ||... |. | .... | .. |
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCD

Kinase ABC1-F_e.AA ABC1-A 207-252 45 1.3e-11 36.72 In-house 1-38 (216) Show / Hide
Range on Protein: 207-252
Range on HMM: 1-38/216
Sequence Identity: 45% (21 aa)

LEDVYSSITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAI
.|..       | |.|| ||| .|||.. |  ||||.| ||.|. |
FEEM-------PFACASIGQVHQAVLKD-GREVAVKIQYPGVAESI

Kinase ABC1-F_e.AA MST 223-243 52 6e-06 14.91 In-house 11-31 (254) Show / Hide
Range on Protein: 223-243
Range on HMM: 11-31/254
Sequence Identity: 52% (11 aa)

SLGQVYKAVLRSTGEVVAVKV
| |.||||. ..||..||.|.
SYGSVYKAIHKQTGKIVAIKM

Kinase ABC1-F_e.AA APH 374-434 20 6e-06 21.08 Pfam 174-248 (248) Show / Hide
Range on Protein: 374-434
Range on HMM: 174-248/248
Sequence Identity: 20% (15 aa)

HADPHPGNLLAT--PE-GKL-AFIDFGMMSDTPPQARFAIIG-H-----VVHMVNRDYEAMA----RDYYALDFL
|.| ||||.. .  |. |.. ..||....   .| . .|..  |         .  .| .      .|. .....
HGDFHPGNVMWDPRPDGGRVTGVIDWDDACWGDPHYDLAMCWWHWWCRWFWPEWRDAYGRAYCRHDPDWHRMRWW

Kinase ABC1-F_e.AA ABC1 280-320 27 3e-05 17.79 In-house 81-123 (123) Show / Hide
Range on Protein: 280-320
Range on HMM: 81-123/123
Sequence Identity: 27% (12 aa)

LLDEFASRVYQELNYVQEGFNAKKFMELYG--DRVDVKVPSIC
..||| .  ..|...  |. ||.|. .|    .. ...|| | 
FVDEFQKELPWECDFNNEARNAEKCRQLFKKFHWPFFYVPRIH

Kinase ABC1-F_e.AA YSK 223-243 47 7.9e-05 10.07 In-house 11-31 (257) Show / Hide
Range on Protein: 223-243
Range on HMM: 11-31/257
Sequence Identity: 47% (10 aa)

SLGQVYKAVLRSTGEVVAVKV
| | |||.. . |..|||.|.
SFGEVYKGIDNRTQRVVAIKI

Kinase ABC1-F_e.AA ABC1-A 290-339 32 0.000109 12.45 In-house 74-123 (216) Show / Hide
Range on Protein: 290-339
Range on HMM: 74-123/216
Sequence Identity: 32% (16 aa)

QELNYVQEGFNAKKFMELYGDRVDVKVPSICWDYTSVKVLTMEWIDGTKL
.| .|  |   ..|| .|  |  .. || .   |.. .||||| . |. .
WECDYQREARCMQKFRQLLKDWPFFYVPHVIDEYCTDRVLTMELMYGFPI

Kinase ABC1-F_e.AA S_TKc 213-584 12 0.000255 -113.57 SMART 1-231 (231) Show / Hide
Range on Protein: 213-584
Range on HMM: 1-231/231
Sequence Identity: 12% (50 aa)

SITPSPVAAASLGQVYKAVLRSTGEVVAVKVQRPGIAQAIGLDFFLLRNVCQLIDKYVDVVTTNVVALLDEFASRVYQELNYVQEGFNAKKFMELYGDRV
     ..   . |.|||.. ..||..||.|. .                                         ....|..  ..  . .    ||.  .
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK----------------------------------------EHIRREIQILKK--HHPNIVKLYDVFQ

DVKVPSICWDYTSVKVLTMEWIDG--TKLSEQEVIESQG-------LNVLKMVDIGIQ--CSLRQLLEYGYFHADPHPGNLLATPEGKLAFIDFGMMSDT
|           .   . || .||    | .  .|...|       ..      .  |  | |  . . |  | |  | |.| .    .  .|||.    
D-----------DHLYMVMEYCDGDLGDLFD--YIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDE--HIKICDFGLARQL

PPQARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVSPIVPALKSFFDDVLDATVSELNFKT-IVD--GLGAVLYQYPFDGTYLLDCKLASLMFLFS
                  .     ..| |   |                             . .  .|   .| .||     |  . .     .. .| 
------------------TTFCGTPWYMAPEVL----------------------------GYGKCKCDWWSCGCILYEMLC-GYPPFP----QMQMMFK

LFLFSVPPYYALILRSLTVLEGLALYTDPNFKVLAAAYPYFAKRLLTDPNPYLRDALVELLFKDGSFRWQRLENLL-VQGRKSSDFV
. .                                               | ..| .  .| || . |.   | |   .  |.  ..
KIG----------------------------------------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF

Kinase ABC1-F_e.AA RAD53 225-242 38 0.000348 7.79 In-house 13-30 (305) Show / Hide
Range on Protein: 225-242
Range on HMM: 13-30/305
Sequence Identity: 38% (7 aa)

GQVYKAVLRSTGEVVAVK
|.|..|. ..|...||.|
GTVKLAYEKKTCQKVAIK

Kinase ABC1-F_e.AA STE11 225-242 55 0.000676 10.31 In-house 13-30 (303) Show / Hide
Range on Protein: 225-242
Range on HMM: 13-30/303
Sequence Identity: 55% (10 aa)

GQVYKAVLRSTGEVVAVK
|.|||..  .|||..|||
GTVYKCMNVDTGELMAVK

Kinase ABC1-F_e.AA LISK 225-242 55 0.000862 7.97 In-house 8-25 (296) Show / Hide
Range on Protein: 225-242
Range on HMM: 8-25/296
Sequence Identity: 55% (10 aa)

GQVYKAVLRSTGEVVAVK
|.|||  .| ||.|.|.|
GKVYKGTHRQTGQVMAIK

Kinase ABC1-F_e.AA CRK7 225-242 66 0.000887 8.68 In-house 13-30 (343) Show / Hide
Range on Protein: 225-242
Range on HMM: 13-30/343
Sequence Identity: 66% (12 aa)

GQVYKAVLRSTGEVVAVK
||||||.  .||| || |
GQVYKAKNKHTGEMVALK