Gene ABC1-F_b (S.moellendorffii)

ABC1-F_b

Species: S.moellendorffii
Alias: ABC1-F_b
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-F

Sequence

Name Sequence Type Origin Length Description Download
ABC1-F_b.AA Protein None 613 None Fasta, JSON
ABC1-F_b.NA RNA None 1842 None Fasta, JSON

Protein domain

Protein domains of ABC1-F_b.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-F_b.AA ABC1 90-194 40 2.5e-35 121.06 Pfam 1-110 (126) Show / Hide 
Range on Protein: 90-194
Range on HMM: 1-110/126
Sequence Identity: 40% (44 aa)

KELGAHTSEIFAEISKEPLAAASLGQVYKAKLFS-GETVAVKVLRPGVPARLALDARLLNLVGGQLQRFTRA---RG-DVAAVVNEMVAHMLEETDYLNE
.|||.  .|||.|...||.||||..||..|.| . ||.|||||..|||  |. .| ... ..   ..||      .. |  ..|.|.   . .| ||..|
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

AKNTERFASL
|||.|||. .
AKNMERFREN
Kinase ABC1-F_b.AA ABC1 90-136 51 2.3e-16 60.6 In-house 1-46 (123) Show / Hide 
Range on Protein: 90-136
Range on HMM: 1-46/123
Sequence Identity: 51% (24 aa)

KELGAHTSEIFAEISKEPLAAASLGQVYKAKLFSGETVAVKVLRPGV
..||    ..| | ...|.||||..|| .||| .|.||||||. |||
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKDGQTVAVKVQHPGV
Kinase ABC1-F_b.AA ABC1-B 90-131 57 2.5e-14 49.08 In-house 1-41 (125) Show / Hide 
Range on Protein: 90-131
Range on HMM: 1-41/125
Sequence Identity: 57% (24 aa)

KELGAHTSEIFAEISKEPLAAASLGQVYKAKLFSGETVAVKV
| ||    ..| | ...|.||||| || .|||  ||||||||
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHDGETVAVKV
Kinase ABC1-F_b.AA ABC1-A 103-136 50 5.9e-09 27.37 In-house 1-34 (216) Show / Hide 
Range on Protein: 103-136
Range on HMM: 1-34/216
Sequence Identity: 50% (17 aa)

ISKEPLAAASLGQVYKAKLFSGETVAVKVLRPGV
    | |.|| ||| .| | .|  ||||.  |||
FEEMPFACASIGQVHQAVLKDGREVAVKIQYPGV
Kinase ABC1-F_b.AA TKL 108-133 28 0.000909 9.46 In-house 1-35 (364) Show / Hide 
Range on Protein: 108-133
Range on HMM: 1-35/364
Sequence Identity: 28% (10 aa)

LAAASLGQVYKAKLFS---------GETVAVKVLR
.   . |.|||.|.           |..||||...
IGSGGFGEVYKGKWRGWGGKCPSDTGKDVAVKKFK
Kinase ABC1-F_b.AA ABC1-C 127-143 58 0.002102 5.95 In-house 1-17 (307) Show / Hide 
Range on Protein: 127-143
Range on HMM: 1-17/307
Sequence Identity: 58% (10 aa)

VAVKVLRPGVPARLALD
|||||| ||. |   .|
VAVKVLHPGLLAQVHMD
Kinase ABC1-F_b.AA ABC1 175-194 40 0.041688 5.72 In-house 89-108 (123) Show / Hide 
Range on Protein: 175-194
Range on HMM: 89-108/123
Sequence Identity: 40% (8 aa)

MLEETDYLNEAKNTERFASL
. .| |..|||.| |... |
LPWECDFNNEARNAEKCRQL
Kinase ABC1-F_b.AA ABC1-A 216-238 43 0.05374 3.03 In-house 98-120 (216) Show / Hide 
Range on Protein: 216-238
Range on HMM: 98-120/216
Sequence Identity: 43% (10 aa)

VKVPKIFWRYTTKGVLTMEWIDG
. ||...  |.|  ||||| . |
FYVPHVIDEYCTDRVLTMELMYG
Kinase ABC1-F_b.AA ABC1-C 272-286 66 0.039271 1.9 In-house 132-146 (307) Show / Hide 
Range on Protein: 272-286
Range on HMM: 132-146/307
Sequence Identity: 66% (10 aa)

DGFFHADPHPGNLVV
| | ||| ||||..|
DNFVHADLHPGNILV
Kinase ABC1-F_b.AA ABC1-C 386-413 35 0.05282 1.49 In-house 280-307 (307) Show / Hide 
Range on Protein: 386-413
Range on HMM: 280-307/307
Sequence Identity: 35% (10 aa)

FGLVIRALGSLEGTATTLDPEFRVIESA
|  .. |.  |||    |||   ..| |
FASIVFAIMVLEGLGRSLDPKLDILEAA