Gene ABC1-H (S.moellendorffii)

ABC1-H

Species: S.moellendorffii
Alias: ABC1-H
External Links:
Annotation:

Classification

Group: Atypical
Family: ABC1
Subfamily: ABC1-H

Sequence

Name Sequence Type Origin Length Description Download
ABC1-H.AA Protein None 495 None Fasta, JSON
ABC1-H.NA RNA None 1488 None Fasta, JSON

Protein domain

Protein domains of ABC1-H.AA. The domains are annotated by HMM profiles from Pfam and SMART, as well as in-house data which includes HMMs of each individual kinase group, family and subfamily. Here is domain list in details, including sequence identity, significance and alignment. In particular, you can find can find the best hit kinase group/family/subfamily, which is helpful to understand the relationship between kinases.Kinase domain and best hit kinase group/family/subfamily are highlighted in red and blue. Visualized by pviz.

Usage: Zoom in selected region by dragging mouse and zoom out by double-clicking.

Show/hide domain list
Domain Protein name Domain Name Range Identity (%) Significance Score Profile Source Profile Range (length) Alignment
ABC1 ABC1-H.AA ABC1 145-268 31 2.4e-31 107.67 Pfam 1-126 (126) Show / Hide 
Range on Protein: 145-268
Range on HMM: 1-126/126
Sequence Identity: 31% (40 aa)

EDLGRSLDDVYEYVDSAPLASASIAQVHAARLKGSKKDVVIKVLKPGVVDVLRADLNFLYVAARVLEFLNPQI--SRTSLVSVIGDLRTSIMEEADFQKE
|.||. ......  |  |.|.||||||| |||| . ..|..||. ||| . ...|.. ... |...... | .   |  |. .. ..| .. .| |.  |
EELGCPWEEIFQEFDEEPIAAASIAQVHRARLKDDGEEVAVKVQHPGVKKRMMRDIYNMRWMAKWVKRFFPGYRRQRFDLMWIVDEFRKNLPWELDYRRE

AVNVESFRTYLETMNLFKQATAPVVY
| | | ||  ..  .. .  ..| ||
AKNMERFRENFRHWHRQPWVYVPKVY
Kinase ABC1-H.AA ABC1 145-253 32 1.8e-20 74.33 In-house 1-109 (123) Show / Hide 
Range on Protein: 145-253
Range on HMM: 1-109/123
Sequence Identity: 32% (36 aa)

EDLGRSLDDVYEYVDSAPLASASIAQVHAARLKGSKKDVVIKVLKPGVVDVLRADLNFLYVAARVLEFLNPQ--ISRTSLVSVIGDLRTSIMEEADFQKE
.|||   .|| .  |  |.|.|||||||.|.||.    |. ||..||| .  . |.| . .  .... . |.  .   .|  .. ...... .| ||..|
QDLG-NWEDVFSEFDEKPFAAASIAQVHRAKLKD-GQTVAVKVQHPGVREQIHYDINNMEMVVKMCDWFFPGPDFKWFFLMWFVDEFQKELPWECDFNNE

AVNVESFRTYL
| | | .| ..
ARNAEKCRQLF
Kinase ABC1-H.AA ABC1-B 145-268 25 1.7e-14 49.66 In-house 1-125 (125) Show / Hide 
Range on Protein: 145-268
Range on HMM: 1-125/125
Sequence Identity: 25% (33 aa)

EDLGRSLDDVYEYVDSAPLASASIAQVHAARLKGSKKDVVIKVLKPGVVDVLRADLNFLYVAARVLEFLNP------QISRTSLVSVIGDLRTSIMEEAD
.|||   .||..  |  |.|.||.|||| | |..    |  || .| . .  . |.. . .  .|.. . |       .  . ...   ..  .. .| |
KDLG-NIEDVFSEFDQKPIAAASLAQVHRAKLHD-GETVAVKVQHPWLRKQFHYDMMMMELFVKVCDWFFPKSPDFKEFPFMWFHD---EIQKNLPQELD

FQKEAVNVESFRTYLETMNLFKQATAPVVY
| .|| | |  | ..  .  |..   | ..
FYNEARNAEKCRQMFKKFKHFDFLYVPRIH
Kinase ABC1-H.AA ABC1-A 158-192 45 1e-06 19.04 In-house 1-34 (216) Show / Hide 
Range on Protein: 158-192
Range on HMM: 1-34/216
Sequence Identity: 45% (16 aa)

VDSAPLASASIAQVHAARLKGSKKDVVIKVLKPGV
    | | ||| |||.|.||. .. |..|.  |||
FEEMPFACASIGQVHQAVLKDGRE-VAVKIQYPGV
Kinase ABC1-H.AA ABC1-C 183-249 32 9e-06 13.53 In-house 1-66 (307) Show / Hide 
Range on Protein: 183-249
Range on HMM: 1-66/307
Sequence Identity: 32% (22 aa)

VVIKVLKPGVVDVLRADLNFLYVAARVLEFLNPQISRTSLVSVIGDLRTSIMEEADFQKEAVNVESF
| .||| ||..     ||  . . .|||  | | |   ||  .. .    ..   |   || |.| |
VAVKVLHPGLLAQVHMDLLLMKIGSRVLGVL-PGIKWLSLPEIVEEFEKLMVQQIDLRYEAQNLEHF
Kinase ABC1-H.AA S_TKc 157-484 11 0.000156 -110.44 SMART 1-231 (231) Show / Hide 
Range on Protein: 157-484
Range on HMM: 1-231/231
Sequence Identity: 11% (40 aa)

YVDSAPLASASIAQVHAARLKGSKKDVVIKVLKPGVVDVLRADLNFLYVAARVLEFLNPQISRTSLVSVIGDLRTSIMEEADFQKEAVNVESFRTYLETM
|    .. . . ..|. .| |.... | ||..|                                          .|. | .  |.  . .   ......
YEILRKIGKGAFGKVYKCRHKKTGRIVAIKIIK-----------------------------------------EHIRREIQILKK--HHPNIVKLYDVF

NLFKQATAPVVYRHCSTRRVLTMERLYGVPL--TDLKSISSIVPNPE----ATLITALNVWFGSLLGCETFHA------DVHAGNLLVLRDGRIGFIDFG
                ..  . ||    ..    ||...    . .      .  .|  .    ... |  |       |.   |.|. .  .|  .|||
QD--------------DHLYMVMEY---CDGDLGDLFDYIKKRGRHGLRFPFPE-HARFYMYQICCALEYCHSHGIIHRDLKPENILLDE--HIKICDFG

IVGRVSPKTWVAVETFLASFGTGDYYA--MATALNQMGATDK-KVD----------LLR----FSKDLEKIFSAVKDLDSDIRITTAGGPQGATVAATLA
.  ..               || .| |  .          .| |.|          .|     |. .....|  ..                        
LARQL-----------TTFCGTPWYMAPEVL-------GYGKCKCDWWSCGCILYEMLCGYPPFP-QMQMMFKKIG------------------------

VDERQINALLLDVFRLSEAYGLRFPREFGLLLKQLLYFDRYTRLLAPDLKV-----LQDERV
                        ..|.  .....| .|   |. | ..        ... .
------------------------SPEAKDFIRKCLQKDPEKRPTA-EALQDEWDIKCHPWF
Kinase ABC1-H.AA ABC1-A 272-287 62 0.000795 9.43 In-house 108-123 (216) Show / Hide 
Range on Protein: 272-287
Range on HMM: 108-123/216
Sequence Identity: 62% (10 aa)

STRRVLTMERLYGVPL
.| ||||||. ||.|.
CTDRVLTMELMYGFPI